Factsheet for Solyc04g008050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075907	Potato	nucleus	93.27	93.42
VIT_01s0011g05830.t01	Wine grape	nucleus	63.15	59.08
KRH49669	Soybean	nucleus	50.61	52.29
KRH70359	Soybean	nucleus	50.61	52.29
CDY64566	Canola	nucleus	28.29	49.2
Bra026635.1-P	Field mustard	nucleus	28.13	48.81
CDY09419	Canola	nucleus	28.13	48.81
AT2G01760.2	Thale cress	nucleus	28.75	45.85
CDY68249	Canola	nucleus	28.44	42.56
TraesCS4D01G239900.1	Wheat	nucleus	40.67	38.89
TraesCS4A01G063100.1	Wheat	nucleus	40.67	38.89
Os03t0224200-01	Rice	nucleus	40.98	38.78
HORVU4Hr1G066480.1	Barley	nucleus	40.37	38.6
TraesCS4B01G240100.1	Wheat	nucleus	40.37	38.6
OQU92974	Sorghum	nucleus	40.21	38.34
Zm00001d048046_P001	Maize	nucleus	39.91	38.05
Zm00001d028265_P002	Maize	nucleus	40.21	37.57
GSMUA_Achr1P22230_001	Banana	nucleus	41.44	37.48
Solyc05g054390.2.1	Tomato	nucleus	37.46	36.95
Solyc01g065540.2.1	Tomato	nucleus	37.77	36.48
GSMUA_Achr8P30850_001	Banana	nucleus	39.6	35.97
Solyc07g005140.2.1	Tomato	nucleus	31.65	31.13
Solyc05g014260.2.1	Tomato	nucleus	25.08	28.23
Solyc12g010330.1.1	Tomato	nucleus	30.28	27.97
Solyc12g099380.1.1	Tomato	nucleus	22.94	27.03
Solyc11g072330.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	13.46	26.67
Solyc06g005680.2.1	Tomato	nucleus	10.7	26.32
Solyc10g080960.1.1	Tomato	nucleus	10.09	24.81
Solyc10g078310.1.1	Tomato	nucleus	10.24	23.1
Solyc06g076350.2.1	Tomato	nucleus	11.31	22.98
Solyc03g026250.1.1	Tomato	nucleus	11.62	22.82
Solyc07g019550.1.1	Tomato	nucleus	12.54	22.34
Solyc01g091810.1.1	Tomato	nucleus	16.97	19.2

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR001789	InterPro:IPR017930	UniProt:K4BNW1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072
PFAM:PF00249	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF32	InterPro:SANT/Myb
SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	EnsemblPlantsGene:Solyc04g008050.2	EnsemblPlants:Solyc04g008050.2.1
TIGRFAMs:TIGR01557	UniParc:UPI0002766D83	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:1707771..1714100

Molecular Weight (calculated)

71633.0 Da

IEP (calculated)

7.264

GRAVY (calculated)

-0.290

Length

654 amino acids

Sequence
(BLAST)

001: MVSMSGEVAT CKSEATVVTD HFPVGLRVLV VDDDVVCLRI IEQMLRRCKY SVTTCTQAMV ALNLLREKRG TFDIVLSDVH MPDMDGFKLL ELVGLEMDLP
101: VIMMSGDGRT NLVMRGVQHG ACDYLIKPIR DEELKNIWQH VVRKRYNSSK EPECSGSLDD NDRYRRRSDD AECASSVIEG ADGVLKPQKK KREAKEDDTE
201: MENDDPSTTK KPRVVWSVEL HQQFVSAVNQ LGIDKAVPKR ILELMNVPGL TRENVASHLQ KFRLYLKRLS GVVQQQGGLP STFCGPIEQN SELGSLGRFD
301: IQALAASGQI PPETLTALHA ELLGRSTSNL VLPAVEQQNL VQVSLQQAKC IPVDQVMAYG QPLLKCPASI SNSKHLSQAI LSAEDVHSGF GSQRAKNICM
401: VPSSNPIAPN SNMLTAMMQQ QQWQKQQQIE LQHRQSGPPE VNRSINVQPS CLVLPSQLPG HFQVGDSPAS ISRAGSLSKS SVIDYGVLSP QSNNSSGVVQ
501: VLDRELKPEC GLNRLPSGGS LSRSCSINAD NSVDLQLHNS SSAFGSSKQL PGLIPSHLGS PVPYCINSSL VLDQGRMKGA SIPSRFAVDE SDSPMCNFNT
601: AKIYLEETKV KQEPNMNVME NAKVGPAIFQ KFQPGDLMSV FRLSFARVKV SSSP

Best Arabidopsis Sequence Match ( AT3G16857.1 )
(BLAST)

001: MMNPSHGRGL GSAGGSSSGR NQGGGGETVV EMFPSGLRVL VVDDDPTCLM ILERMLRTCL YEVTKCNRAE MALSLLRKNK HGFDIVISDV HMPDMDGFKL
101: LEHVGLEMDL PVIMMSADDS KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE ETGERQQQQH RGGGGGAAVS GGEDAVDDNS
201: SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL MNVPGLTREN VASHLQKYRI YLRRLGGVSQ
301: HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN
401: LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS NRISERSGFS GRNNIPESSR VLPTSYTNLT
501: TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN IGIAFDSHQD SESAAFSASE AYSSSSMSRH
601: NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQV

Arabidopsis Description

ARR1Two-component response regulator ARR1 [Source:UniProtKB/Swiss-Prot;Acc:Q940D0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.