Factsheet for VIT_01s0011g05830.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075907	Potato	nucleus	60.37	64.62
Solyc04g008050.2.1	Tomato	nucleus	59.08	63.15
KRH70359	Soybean	nucleus	56.37	62.24
KRH49669	Soybean	nucleus	55.51	61.3
CDY64566	Canola	nucleus	28.18	52.39
Bra026635.1-P	Field mustard	nucleus	28.04	51.99
CDY09419	Canola	nucleus	28.04	51.99
AT2G01760.2	Thale cress	nucleus	29.33	50.0
Os03t0224200-01	Rice	nucleus	45.21	45.73
CDY68249	Canola	nucleus	28.33	45.31
VIT_11s0052g01160.t01	Wine grape	cytosol	13.73	44.44
HORVU4Hr1G066480.1	Barley	nucleus	42.78	43.71
OQU92974	Sorghum	nucleus	42.78	43.59
TraesCS4B01G240100.1	Wheat	nucleus	42.49	43.42
TraesCS4D01G239900.1	Wheat	nucleus	42.49	43.42
TraesCS4A01G063100.1	Wheat	nucleus	42.49	43.42
Zm00001d048046_P001	Maize	nucleus	42.06	42.86
Zm00001d028265_P002	Maize	nucleus	41.92	41.86
GSMUA_Achr1P22230_001	Banana	nucleus	43.06	41.63
VIT_05s0077g01480.t01	Wine grape	nucleus	38.2	41.46
GSMUA_Achr8P30850_001	Banana	nucleus	41.34	40.14
VIT_01s0010g02230.t01	Wine grape	nucleus	26.9	31.65
VIT_07s0005g01010.t01	Wine grape	nucleus	23.75	31.09
VIT_17s0000g10100.t01	Wine grape	nucleus	25.04	30.7
VIT_11s0206g00060.t01	Wine grape	nucleus	30.33	30.59
VIT_17s0000g10110.t01	Wine grape	nucleus	18.88	29.2
VIT_04s0008g05900.t01	Wine grape	nucleus	27.75	27.99
VIT_06s0004g05120.t01	Wine grape	nucleus	11.02	24.76
VIT_16s0100g00420.t01	Wine grape	nucleus	18.88	22.3
VIT_08s0040g00900.t01	Wine grape	nucleus	9.59	21.9
VIT_16s0100g00430.t01	Wine grape	nucleus	14.45	20.32

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250832	wikigene:100250832	MapMan:11.4.2.4	MapMan:15.5.23	ProteinID:CCB50781
ProteinID:CCB50781.1	InterPro:CheY-like_superfamily	UniProt:F6HFD2	EMBL:FN595752	GO:GO:0000160	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR001789
InterPro:IPR017930	EntrezGene:LOC100250832	wikigene:LOC100250832	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072
PFAM:PF00249	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF32	InterPro:SANT/Myb
SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGR:TC64978	TIGR:TC68593
TIGRFAMs:TIGR01557	UniParc:UPI00021081CC	ArrayExpress:VIT_01s0011g05830	EnsemblPlantsGene:VIT_01s0011g05830	EnsemblPlants:VIT_01s0011g05830.t01	RefSeq:XP_002281291
RefSeq:XP_002281291.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:5599545..5605879

Molecular Weight (calculated)

75429.6 Da

IEP (calculated)

6.352

GRAVY (calculated)

-0.354

Length

699 amino acids

Sequence
(BLAST)

001: MAALLKVPPQ SSGGTNGSCK ADVVVSDQFP AGLRVLVVDD DVTCLKILEQ MLRRCLYHGI STKRQPEGPK PGFMVEGATL ETVTPIPYDV VNDLKVTTCS
101: QATIALNILR EKKGCFDIVL SDVHMPDMDG YKLLEHVGLE MDLPVIMMSA DGRTSAVMRG IRHGACDYLI KPIREEELKN IWQHVVRKKW NENKEHEHSG
201: SLEDNDRHKR GGEDAEYASS VNEGAEGILK GQKKRRDSKD EDDGELENED PSTSKKPRVV WSVELHQQFV SAVNQLGIDK AVPKRILELM NVPGLTRENV
301: ASHLQKFRLY LKRLSGVAQQ QGGIPNSFCG PVEPNVKLGS LGRFDIQALA ASGQIPPQTL AALQAELLGR PTSNLVLPAM DQPALLQASL QGPKCIPVEH
401: GVAFGQPLVK CQTNISKHFP PTVVSTEDVP SGFGAWPSNS LGTVGTSGSL GGLSAQNNNI LMDMLHQQQQ HQQQQQQQAV IPEPSRSINV QPSCLVVPSR
501: TSASFQAGNS PASVNQNCSF NRNAVIDYSL LTPQSNNSSL SVGQISDGDL KNTTVLGGFS APGSISPSVS SCSVNAGNST TRPVQNSTVT FGAPRQLPGV
601: VSNICDIQGS YGARSGEVLD QGLLRNLGFV GKGTSIPSRF AVDEPESPIS NLNNGKVYGE NEGNRVKQEP NLDYMENARV GVPMLPHFTP NDLMSVFSD

Best Arabidopsis Sequence Match ( AT3G16857.1 )
(BLAST)

001: MMNPSHGRGL GSAGGSSSGR NQGGGGETVV EMFPSGLRVL VVDDDPTCLM ILERMLRTCL YEVTKCNRAE MALSLLRKNK HGFDIVISDV HMPDMDGFKL
101: LEHVGLEMDL PVIMMSADDS KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE ETGERQQQQH RGGGGGAAVS GGEDAVDDNS
201: SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL MNVPGLTREN VASHLQKYRI YLRRLGGVSQ
301: HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN
401: LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS NRISERSGFS GRNNIPESSR VLPTSYTNLT
501: TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN IGIAFDSHQD SESAAFSASE AYSSSSMSRH
601: NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQV

Arabidopsis Description

ARR1Two-component response regulator ARR1 [Source:UniProtKB/Swiss-Prot;Acc:Q940D0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.