Factsheet for VIT_11s0206g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g005140.2.1	Tomato	nucleus	58.3	60.75
Solyc12g010330.1.1	Tomato	nucleus	58.15	56.92
KRH12938	Soybean	nucleus	57.58	56.92
PGSC0003DMT400020233	Potato	nucleus	58.01	56.86
KRH37916	Soybean	nucleus	56.85	56.45
PGSC0003DMT400008290	Potato	nucleus	58.87	52.78
VIT_04s0008g05900.t01	Wine grape	nucleus	52.67	52.67
VIT_11s0052g01160.t01	Wine grape	cytosol	15.01	48.15
VIT_05s0077g01480.t01	Wine grape	nucleus	32.76	35.25
VIT_01s0011g05830.t01	Wine grape	nucleus	30.59	30.33
VIT_17s0000g10100.t01	Wine grape	nucleus	24.39	29.65
VIT_01s0010g02230.t01	Wine grape	nucleus	25.4	29.63
VIT_17s0000g10110.t01	Wine grape	nucleus	19.19	29.42
VIT_07s0005g01010.t01	Wine grape	nucleus	22.66	29.4
VIT_08s0040g00900.t01	Wine grape	nucleus	10.82	24.51
VIT_06s0004g05120.t01	Wine grape	nucleus	10.68	23.79
VIT_16s0100g00420.t01	Wine grape	nucleus	19.05	22.3
VIT_16s0100g00430.t01	Wine grape	nucleus	14.0	19.52

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100259369	wikigene:100259369	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300
ProteinID:ACO88946	ProteinID:ACO88946.1	EMBL:AM423607	ProteinID:CAN60088	ProteinID:CAN60088.1	ProteinID:CCB45217
ProteinID:CCB45217.1	InterPro:CheY-like_superfamily	UniProt:F6GZ31	EMBL:FJ822985	EMBL:FN594985	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072
PFAM:PF00249	PIRSF:PIRSF036392	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF8
EntrezGene:RRB3	wikigene:RRB3	InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI00021080E1	ArrayExpress:VIT_11s0206g00060	EnsemblPlantsGene:VIT_11s0206g00060
EnsemblPlants:VIT_11s0206g00060.t01	unigene:Vvi.18890	RefSeq:XP_002270833	RefSeq:XP_002270833.2	SEG:seg	:

Description

Two-component response regulator [Source:UniProtKB/TrEMBL;Acc:F6GZ31]

Coordinates

chr11:+:7391776..7400056

Molecular Weight (calculated)

75895.6 Da

IEP (calculated)

6.105

GRAVY (calculated)

-0.550

Length

693 amino acids

Sequence
(BLAST)

001: MTVEERKGGL AGEDGVKDPF PVGMRVLAVD DDPTCLMLLD GLLRRCQYQV TTTNQAITAL KMLRENKNNF DLVISDVSMP DMDGFKLLEL VGLEMDLPVI
101: MLSSHSDPKL VMRGITHGAC DYLLKPVRIE ELKNIWQHVI RRKKIDSKDQ NKSADQDNAL HADGEGGEGP PSSSNADQNG KLNRKRKDQN EDEEEEGEEN
201: GEENEDPSSQ KKPRVVWSVE LHRKFVAAVN QLGIEKAVPK RILDLMNVEG LTRENVASHL QKYRLYLKRI SCVATQQANM VAAFGAKDSS YMRMGSLDGF
301: GDFRGLAGPG RLNSTAMSSY PPSGMLGRLN SPAGLSLRGL TSSGLIQTGH AQNSSNSVNT HGKLQPVVLP TNQSASLFQG IPTSLELDQL QQRKCISTQR
401: GEFSSVDNTT VFTTANGFPD SRMTVHSSSN SLSNAPSNPL MLQSNPQQTL CRGGLANQSS LKAVTLNPEP YTMGVSGSSN FLDHGRCNEN WQSALQLSKF
501: PSNSLPLSEP LNCDPLTTNN LREHISSTGS HIRRSPIDFS ATSVLAGPLE DSRGEMPCQS GLIGNVVQNI NYAPKQRWEE QKQDYTQSSN HVFGTLNSII
601: PANNVMGPLN HSLDQNNAAC NRKMDMPLIS QSNASSSSLV QHSEVEKSAM DTKMVSNEDY LLEQTKSQDG LIHNSYESLD DLMSAMIKRS LGS

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.