Factsheet for VIT_08s0040g00900.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66705	Soybean	nucleus	69.93	66.46
CDX80940	Canola	nucleus	50.98	63.93
CDY52133	Canola	nucleus	51.31	62.8
Bra005837.1-P	Field mustard	nucleus	50.65	61.75
Bra004593.1-P	Field mustard	nucleus	48.69	60.32
CDY53674	Canola	nucleus	48.69	60.08
GSMUA_Achr11P...	Banana	nucleus	59.48	60.07
CDX79963	Canola	nucleus	48.37	59.92
AT2G40970.1	Thale cress	nucleus	48.04	59.27
GSMUA_Achr8P05880_001	Banana	nucleus	59.48	57.78
GSMUA_Achr5P27500_001	Banana	nucleus	53.27	57.39
HORVU1Hr1G064950.1	Barley	nucleus	52.61	52.79
TraesCS1D01G257700.1	Wheat	nucleus	52.61	52.1
TraesCS1B01G268900.1	Wheat	nucleus	52.29	51.95
TraesCS1A01G258400.1	Wheat	nucleus	52.29	51.28
Zm00001d010280_P001	Maize	nucleus	49.35	50.5
Zm00001d038191_P001	Maize	nucleus	50.65	49.68
Os05t0412000-00	Rice	nucleus	52.61	38.98
VIT_06s0004g05120.t01	Wine grape	nucleus	38.24	37.62
VIT_17s0000g10110.t01	Wine grape	nucleus	16.34	11.06
VIT_05s0077g01480.t01	Wine grape	nucleus	23.2	11.02
VIT_11s0206g00060.t01	Wine grape	nucleus	24.51	10.82
VIT_01s0010g02230.t01	Wine grape	nucleus	19.93	10.27
VIT_04s0008g05900.t01	Wine grape	nucleus	22.88	10.1
VIT_16s0100g00430.t01	Wine grape	nucleus	16.34	10.06
VIT_16s0100g00420.t01	Wine grape	nucleus	19.28	9.97
VIT_07s0005g01010.t01	Wine grape	nucleus	16.99	9.74
VIT_01s0011g05830.t01	Wine grape	nucleus	21.9	9.59
VIT_17s0000g10100.t01	Wine grape	nucleus	17.65	9.47
VIT_11s0052g01160.t01	Wine grape	cytosol	6.21	8.8

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100256764	wikigene:100256764	MapMan:35.1	EMBL:AM430363	ProteinID:CAN73573
ProteinID:CAN73573.1	ProteinID:CCB57126	ProteinID:CCB57126.1	UniProt:F6HQP5	EMBL:FN596008	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100256764
wikigene:LOC100256764	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31442
PANTHER:PTHR31442:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00015CB08B	ArrayExpress:VIT_08s0040g00900
EnsemblPlantsGene:VIT_08s0040g00900	EnsemblPlants:VIT_08s0040g00900.t01	RefSeq:XP_002283226	RefSeq:XP_002283226.1	RefSeq:XP_003632618	RefSeq:XP_003632618.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:11896661..11898489

Molecular Weight (calculated)

32797.7 Da

IEP (calculated)

6.977

GRAVY (calculated)

-0.470

Length

306 amino acids

Sequence
(BLAST)

001: MREEESNWFS RWEEELPSPE ELMPLSQTLI TPDLALAFDI RNPNSPQAPP PPLPTPQVAP PPPSQPNSAP EFDSGDLGSG AAGDEPARTL KRPRLVWTPQ
101: LHKRFVDAVA HLGIKNAVPK TIMQLMSVDG LTRENVASHL QKYRLYLKRM QGLSAGGGGG GGGGGAGGGA GLAAADPATD HLFASSPVPP HFLHPGRASS
201: EHFLPFVPVA ALQQHHHHHQ QMAVAAAAVA AHPQLQTQYH HHRQVGHFGS PPNGQFEHPF LPRQSQPVHR MGAPVHSPVP AYVEDLESAT ATGGRRVLTL
301: FPTGDD

Best Arabidopsis Sequence Match ( AT3G10760.1 )
(BLAST)

001: MREDDSDWFA RWEEELPSPE ELMPISQSLI SPDLALAFDI RTPNHGNGNS NQPHHHHHHQ TTPPTPSQLQ LPSSQANSSA EFAADSADLG SGGAAGDEPA
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SG82]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.