Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G257700.1 | Wheat | nucleus | 96.07 | 94.82 |
| TraesCS1B01G268900.1 | Wheat | nucleus | 95.74 | 94.81 |
| TraesCS1A01G258400.1 | Wheat | nucleus | 95.74 | 93.59 |
| Zm00001d038191_P001 | Maize | nucleus | 78.03 | 76.28 |
| Zm00001d010280_P001 | Maize | nucleus | 73.44 | 74.92 |
| Os05t0412000-00 | Rice | nucleus | 81.97 | 60.53 |
| GSMUA_Achr11P... | Banana | nucleus | 55.41 | 55.78 |
| GSMUA_Achr8P05880_001 | Banana | nucleus | 57.38 | 55.56 |
| Solyc10g080960.1.1 | Tomato | nucleus | 46.23 | 53.01 |
| PGSC0003DMT400072213 | Potato | nucleus | 46.23 | 53.01 |
| VIT_08s0040g00900.t01 | Wine grape | nucleus | 52.79 | 52.61 |
| Solyc10g078310.1.1 | Tomato | nucleus | 49.18 | 51.72 |
| Bra009087.1-P | Field mustard | nucleus | 45.25 | 51.69 |
| GSMUA_Achr5P27500_001 | Banana | nucleus | 47.87 | 51.41 |
| PGSC0003DMT400018485 | Potato | nucleus | 48.85 | 51.38 |
| KRH71692 | Soybean | nucleus | 43.61 | 51.15 |
| Bra029866.1-P | Field mustard | nucleus | 47.54 | 50.7 |
| Bra005837.1-P | Field mustard | nucleus | 41.64 | 50.6 |
| KRG95053 | Soybean | nucleus | 49.84 | 48.72 |
| Bra004593.1-P | Field mustard | nucleus | 39.34 | 48.58 |
| AT5G05090.1 | Thale cress | nucleus | 42.3 | 48.5 |
| AT2G40970.1 | Thale cress | nucleus | 38.36 | 47.18 |
| KRH66705 | Soybean | nucleus | 49.18 | 46.58 |
| Bra034144.1-P | Field mustard | nucleus | 48.2 | 45.23 |
| AT3G10760.1 | Thale cress | nucleus | 48.52 | 44.18 |
| CDY36273 | Canola | mitochondrion | 32.79 | 41.84 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 32.13 | 35.77 |
| HORVU3Hr1G086000.1 | Barley | nucleus | 25.9 | 34.65 |
| HORVU6Hr1G028680.1 | Barley | nucleus | 21.97 | 10.75 |
| HORVU4Hr1G066480.1 | Barley | nucleus | 22.95 | 10.23 |
| HORVU7Hr1G030050.1 | Barley | nucleus | 20.98 | 10.22 |
| HORVU6Hr1G085560.5 | Barley | nucleus | 22.62 | 10.07 |
| HORVU7Hr1G112830.1 | Barley | cytosol, nucleus | 5.25 | 9.41 |
| HORVU7Hr1G114130.2 | Barley | nucleus | 15.08 | 9.39 |
| HORVU7Hr1G114450.2 | Barley | nucleus | 17.7 | 9.08 |
| HORVU7Hr1G030000.4 | Barley | nucleus | 21.64 | 8.88 |
| HORVU7Hr1G118290.2 | Barley | nucleus | 16.07 | 8.13 |
| HORVU7Hr1G112840.1 | Barley | nucleus | 15.08 | 7.04 |
| HORVU7Hr1G112890.1 | Barley | nucleus | 15.41 | 6.96 |
| HORVU7Hr1G112860.2 | Barley | cytosol | 3.61 | 5.24 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | EMBL:AK372149 | UniProt:F2E7M5 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:HORVU1Hr1G064950 | EnsemblPlants:HORVU1Hr1G064950.1 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 | PANTHER:PTHR31442:SF1 | InterPro:SANT/Myb |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0002007EE9 | SEG:seg | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E7M5]
Coordinates
chrchr1H:-:464420461..464423230
Molecular Weight (calculated)
31365.9 Da
IEP (calculated)
7.126
GRAVY (calculated)
-0.431
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MREEEEPSWF ARFDEDLPAP DELMPLSQSL ITRDLAAAFD IPTHTHGGGP LSGADAAGAA EMNGGASSAA GSSGGNGGGN GEEPARTLKR PRLVWTPQLH
101: KRFVDAVAHL GIKNAVPKTI MQLMSVDGLT RENVASHLQK YRLYLKRMQG LGNGGGGGGG SHSSGSGTDA ATEHLFATGP SPFLPPGRGP PGADPYTPYA
201: AMPAAHHHHH HPQQIGHFHH PAARPLGHYG AGPGAGFDHG FLSRAVASGA PVGPPGMHHR MVGGGAAMGM MAPSSFADEL ELGSRGGAGA GGRRELTLFP
301: TSGDH
101: KRFVDAVAHL GIKNAVPKTI MQLMSVDGLT RENVASHLQK YRLYLKRMQG LGNGGGGGGG SHSSGSGTDA ATEHLFATGP SPFLPPGRGP PGADPYTPYA
201: AMPAAHHHHH HPQQIGHFHH PAARPLGHYG AGPGAGFDHG FLSRAVASGA PVGPPGMHHR MVGGGAAMGM MAPSSFADEL ELGSRGGAGA GGRRELTLFP
301: TSGDH
001: MREDDSDWFA RWEEELPSPE ELMPISQSLI SPDLALAFDI RTPNHGNGNS NQPHHHHHHQ TTPPTPSQLQ LPSSQANSSA EFAADSADLG SGGAAGDEPA
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SG82]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.