Factsheet for Bra029866.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00969	Canola	nucleus	94.76	95.42
Bra034144.1-P	Field mustard	nucleus	88.81	78.15
AT3G10760.1	Thale cress	nucleus	88.46	75.52
Bra009087.1-P	Field mustard	nucleus	61.89	66.29
CDY08579	Canola	nucleus	55.59	65.7
Bra005837.1-P	Field mustard	nucleus	54.55	62.15
Bra004593.1-P	Field mustard	nucleus	47.9	55.47
GSMUA_Achr8P05880_001	Banana	nucleus	58.04	52.7
GSMUA_Achr11P...	Banana	nucleus	55.24	52.15
GSMUA_Achr5P27500_001	Banana	nucleus	51.75	52.11
HORVU1Hr1G064950.1	Barley	nucleus	50.7	47.54
TraesCS1D01G257700.1	Wheat	nucleus	51.05	47.25
TraesCS1B01G268900.1	Wheat	nucleus	50.7	47.08
Bra001378.1-P	Field mustard	nucleus	16.08	46.94
TraesCS1A01G258400.1	Wheat	nucleus	50.7	46.47
Zm00001d010280_P001	Maize	nucleus	47.9	45.82
Zm00001d038191_P001	Maize	nucleus	48.95	44.87
Bra001377.1-P	Field mustard	nucleus	17.13	36.3
Os05t0412000-00	Rice	nucleus	50.35	34.87
Bra018204.1-P	Field mustard	nucleus	35.31	33.22
Bra033809.1-P	Field mustard	nucleus	32.87	32.98
Bra026635.1-P	Field mustard	nucleus	18.88	14.32
Bra037427.1-P	Field mustard	nucleus	13.29	13.92
Bra032035.1-P	Field mustard	nucleus	25.17	12.39
Bra020652.1-P	Field mustard	nucleus	18.53	12.02
Bra023972.1-P	Field mustard	nucleus	19.93	11.0
Bra041027.1-P	Field mustard	nucleus	16.08	10.95
Bra004245.1-P	Field mustard	nucleus	18.88	10.55
Bra012743.1-P	Field mustard	nucleus	21.68	10.47
Bra001643.1-P	Field mustard	nucleus	23.78	10.46
Bra022183.1-P	Field mustard	nucleus	24.83	10.43
Bra004076.1-P	Field mustard	nucleus	17.83	10.02
Bra033527.1-P	Field mustard	nucleus	21.33	9.64
Bra020390.1-P	Field mustard	nucleus	19.93	9.15
Bra014172.1-P	Field mustard	nucleus	12.94	8.24
Bra032275.1-P	Field mustard	nucleus	14.34	8.12
Bra028705.1-P	Field mustard	nucleus	19.58	7.3
Bra005928.1-P	Field mustard	nucleus	18.88	7.11
Bra009284.1-P	Field mustard	nucleus	18.53	6.86
Bra001641.1-P	Field mustard	cytosol	3.15	6.08

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	EnsemblPlantsGene:Bra029866	EnsemblPlants:Bra029866.1	EnsemblPlants:Bra029866.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4EM46	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31442	PANTHER:PTHR31442:SF1	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002547853	SEG:seg	:	:

Description

AT5G05090 (E=3e-076) | myb family transcription factor

Coordinates

chrA05:-:21933335..21934195

Molecular Weight (calculated)

31260.6 Da

IEP (calculated)

7.099

GRAVY (calculated)

-0.565

Length

286 amino acids

Sequence
(BLAST)

001: MREDDSDWFS RWEQDLPSPD ELIPLSQSLI SPDLALAFDI RSPGQQPHHH HPSTPQANSS AEFAADSSDL GGAGDEPART LKRPRLVWTP QLHKRFVDAG
101: AHLGIKNAVP KTIMQLMSVD GLTRENVASH LQKYRLYLKR MQGGGLSSGG GGGSDPATDR LFASSPVPAH FLHPNRSDHF MPSFVPIATL QQQQQMVAAA
201: AANSHLQPPQ FHHRSQIAAG HFGTPTANGK FDASFLARQT QTQTQTQQRM STPTLHSPVS NYVEDLESAN AIGGRTVLTL FPTRED

Best Arabidopsis Sequence Match ( AT3G10760.1 )
(BLAST)

001: MREDDSDWFA RWEEELPSPE ELMPISQSLI SPDLALAFDI RTPNHGNGNS NQPHHHHHHQ TTPPTPSQLQ LPSSQANSSA EFAADSADLG SGGAAGDEPA
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SG82]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.