Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82988 | Canola | nucleus | 89.82 | 98.84 |
| Bra018204.1-P | Field mustard | nucleus | 84.21 | 78.95 |
| AT3G46640.3 | Thale cress | nucleus | 80.0 | 70.37 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 41.75 | 51.97 |
| Os01t0971800-00 | Rice | nucleus | 43.16 | 51.68 |
| Solyc06g005680.2.1 | Tomato | nucleus | 45.96 | 49.25 |
| PGSC0003DMT400005490 | Potato | nucleus | 51.58 | 48.68 |
| Zm00001d011785_P001 | Maize | nucleus | 36.84 | 47.95 |
| KRH24748 | Soybean | nucleus | 50.18 | 46.73 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 50.53 | 46.3 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 43.86 | 45.62 |
| Zm00001d041960_P001 | Maize | nucleus | 41.05 | 45.35 |
| GSMUA_Achr10P... | Banana | nucleus | 44.21 | 45.16 |
| KRH29751 | Soybean | nucleus | 50.53 | 44.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.02 | 43.93 |
| TraesCS3A01G526600.1 | Wheat | nucleus | 43.16 | 43.16 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 43.16 | 42.86 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 42.11 | 42.7 |
| PGSC0003DMT400077979 | Potato | nucleus | 46.67 | 42.36 |
| Bra001378.1-P | Field mustard | nucleus | 14.39 | 41.84 |
| Solyc06g076350.2.1 | Tomato | nucleus | 46.67 | 41.3 |
| Bra004593.1-P | Field mustard | nucleus | 31.93 | 36.84 |
| Bra005837.1-P | Field mustard | nucleus | 31.58 | 35.86 |
| Bra009087.1-P | Field mustard | nucleus | 32.63 | 34.83 |
| Bra029866.1-P | Field mustard | nucleus | 32.98 | 32.87 |
| Bra034144.1-P | Field mustard | nucleus | 35.79 | 31.38 |
| Bra001377.1-P | Field mustard | nucleus | 14.39 | 30.37 |
| Bra037427.1-P | Field mustard | nucleus | 15.44 | 16.12 |
| Bra026635.1-P | Field mustard | nucleus | 19.65 | 14.85 |
| Bra020652.1-P | Field mustard | nucleus | 18.95 | 12.24 |
| Bra041027.1-P | Field mustard | nucleus | 15.79 | 10.71 |
| Bra012743.1-P | Field mustard | nucleus | 21.4 | 10.3 |
| Bra014172.1-P | Field mustard | nucleus | 15.79 | 10.02 |
| Bra032035.1-P | Field mustard | nucleus | 20.35 | 9.98 |
| Bra032275.1-P | Field mustard | nucleus | 17.19 | 9.7 |
| Bra023972.1-P | Field mustard | nucleus | 16.84 | 9.27 |
| Bra004076.1-P | Field mustard | nucleus | 16.49 | 9.23 |
| Bra033527.1-P | Field mustard | nucleus | 20.35 | 9.16 |
| Bra001643.1-P | Field mustard | nucleus | 20.7 | 9.08 |
| Bra004245.1-P | Field mustard | nucleus | 16.14 | 8.98 |
| Bra022183.1-P | Field mustard | nucleus | 20.0 | 8.37 |
| Bra020390.1-P | Field mustard | nucleus | 17.89 | 8.19 |
| Bra009284.1-P | Field mustard | nucleus | 19.3 | 7.12 |
| Bra028705.1-P | Field mustard | nucleus | 18.95 | 7.04 |
| Bra005928.1-P | Field mustard | nucleus | 17.54 | 6.59 |
| Bra001641.1-P | Field mustard | cytosol | 2.46 | 4.73 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:27.1.6.3.1 | EnsemblPlantsGene:Bra033809 | EnsemblPlants:Bra033809.1 | EnsemblPlants:Bra033809.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M4EYB7 | InterPro:Myb_dom |
| InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 | InterPro:SANT/Myb | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | UniParc:UPI0002543B8F | SEG:seg | : | : | : |
Description
AT5G59570 (E=1e-077) | myb family transcription factor
Coordinates
chrA01:+:13998288..13999145
Molecular Weight (calculated)
31013.2 Da
IEP (calculated)
6.655
GRAVY (calculated)
-0.746
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEVRMKDV SGDGERVMEW EKGLPSDEDL ASLSYSLVPS NLAMAFSITP EKSRTIQDVN RASETTFSSL RGGSSGPNTS SSTNLGVAAA EEEEEDRVGS
101: SSPGSDSKKQ KISEEEGDSG TELKRARLVW TPQLHKRFVD VVAHLGIKNA VPKTIMQLMN VQGLTRENVA SHLQKYRLYL KRMQGFTSEG PSSSDKLFSS
201: TPVPPQSFQD QGSASAGAPS MMQMPVYAHH MGMQGYHHQN HAHDPYHQNH HRGSGAPANP YMMQQNKFGS MASYPPVGGG SANEN
101: SSPGSDSKKQ KISEEEGDSG TELKRARLVW TPQLHKRFVD VVAHLGIKNA VPKTIMQLMN VQGLTRENVA SHLQKYRLYL KRMQGFTSEG PSSSDKLFSS
201: TPVPPQSFQD QGSASAGAPS MMQMPVYAHH MGMQGYHHQN HAHDPYHQNH HRGSGAPANP YMMQQNKFGS MASYPPVGGG SANEN
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.