Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 72.49 | 59.5 |
| Zm00001d011785_P001 | Maize | nucleus | 48.91 | 51.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 67.25 | 50.49 |
| Solyc06g005680.2.1 | Tomato | nucleus | 57.64 | 49.62 |
| Os01t0971800-00 | Rice | nucleus | 51.53 | 49.58 |
| PGSC0003DMT400005490 | Potato | nucleus | 62.45 | 47.35 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 64.19 | 47.27 |
| Zm00001d041960_P001 | Maize | nucleus | 51.97 | 46.12 |
| KRH24748 | Soybean | nucleus | 60.7 | 45.42 |
| CDY61256 | Canola | nucleus | 54.15 | 45.26 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 53.71 | 44.89 |
| CDX68392 | Canola | nucleus | 51.09 | 44.66 |
| CDX82988 | Canola | nucleus | 50.22 | 44.4 |
| CDX99104 | Canola | nucleus | 55.9 | 44.14 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 54.15 | 44.13 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 54.59 | 43.55 |
| TraesCS3A01G526600.1 | Wheat | nucleus | 53.71 | 43.16 |
| KRH29751 | Soybean | nucleus | 60.7 | 43.03 |
| Bra018204.1-P | Field mustard | nucleus | 55.46 | 41.78 |
| Bra033809.1-P | Field mustard | nucleus | 51.97 | 41.75 |
| AT5G59570.2 | Thale cress | nucleus | 52.4 | 40.27 |
| PGSC0003DMT400077979 | Potato | nucleus | 54.59 | 39.81 |
| AT3G46640.3 | Thale cress | nucleus | 54.59 | 38.58 |
| Solyc06g076350.2.1 | Tomato | nucleus | 54.15 | 38.51 |
| KRH76596 | Soybean | mitochondrion | 18.34 | 34.71 |
| GSMUA_Achr11P... | Banana | nucleus | 45.41 | 34.32 |
| GSMUA_Achr5P27500_001 | Banana | nucleus | 41.48 | 33.45 |
| GSMUA_Achr10P... | Banana | nucleus | 34.93 | 33.33 |
| GSMUA_Achr8P05880_001 | Banana | nucleus | 44.98 | 32.7 |
| GSMUA_Achr2P01920_001 | Banana | nucleus, plastid | 36.68 | 28.97 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.03 | 14.66 |
| GSMUA_Achr10P... | Banana | nucleus | 24.45 | 12.9 |
| GSMUA_Achr3P14630_001 | Banana | cytosol | 20.09 | 12.6 |
| GSMUA_Achr5P16510_001 | Banana | cytosol, nucleus, plastid | 10.92 | 11.57 |
| GSMUA_Achr5P13050_001 | Banana | cytosol | 10.92 | 10.92 |
| GSMUA_Achr3P13400_001 | Banana | nucleus | 27.95 | 10.19 |
| GSMUA_Achr11P... | Banana | nucleus | 27.95 | 10.13 |
| GSMUA_Achr8P32070_001 | Banana | nucleus | 22.71 | 9.54 |
| GSMUA_Achr10P... | Banana | nucleus | 27.07 | 9.49 |
| GSMUA_Achr2P05130_001 | Banana | nucleus | 26.64 | 9.47 |
| GSMUA_Achr8P30850_001 | Banana | nucleus | 29.26 | 9.31 |
| GSMUA_Achr1P22230_001 | Banana | nucleus | 29.26 | 9.27 |
| GSMUA_Achr11P... | Banana | nucleus | 25.76 | 8.95 |
| GSMUA_Achr9P16610_001 | Banana | nucleus | 26.2 | 8.3 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:27.1.6.3.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G07060_001 |
| EnsemblPlants:GSMUA_Achr5P07060_001 | EnsemblPlants:GSMUA_Achr5T07060_001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M0SWD5 | InterPro:Myb_dom |
| InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 | InterPro:SANT/Myb | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | UniParc:UPI0002950CC2 | SEG:seg | : | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G07060_001]
Coordinates
chr5:-:5116109..5117026
Molecular Weight (calculated)
25263.0 Da
IEP (calculated)
6.653
GRAVY (calculated)
-0.479
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEAASDADY DRISAVAGDG GDDGSVLEWE FGLPSGDDLV PLSQSLIPPE LASAFRINPE PARTLLDADE PSHKTRRRPR LVWTPQLHKR FVDVVAHLGI
101: KNAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYLKRMQGLS NEGPSSSDHL FASTPVPQSL REQQLPVPMP YAVPTMIPMP AYGMPHPHNG HGSPMGMVPV
201: NNHQAGGAFY GFEAHHYPYG AFGERHKDW
101: KNAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYLKRMQGLS NEGPSSSDHL FASTPVPQSL REQQLPVPMP YAVPTMIPMP AYGMPHPHNG HGSPMGMVPV
201: NNHQAGGAFY GFEAHHYPYG AFGERHKDW
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.