Factsheet for GSMUA_Achr5P13050_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	31.88	27.44
GSMUA_Achr5P16510_001	Banana	cytosol, nucleus, plastid	25.76	27.31
VIT_11s0052g01160.t01	Wine grape	cytosol	25.33	26.85
Zm00001d032784_P001	Maize	nucleus	32.75	22.26
KXG38401	Sorghum	nucleus	32.75	21.61
GSMUA_Achr3P14630_001	Banana	cytosol	33.62	21.1
AT5G49240.1	Thale cress	cytoskeleton, cytosol, nucleus	23.58	18.49
Bra037427.1-P	Field mustard	nucleus	21.4	17.95
CDX86245	Canola	nucleus	21.4	17.95
CDY56439	Canola	nucleus	21.4	17.82
Os10t0463400-01	Rice	nucleus	22.27	14.96
CDX76652	Canola	nucleus	26.2	14.32
CDY11437	Canola	nucleus	26.2	14.29
Bra041027.1-P	Field mustard	nucleus	25.76	14.05
GSMUA_Achr8P32070_001	Banana	nucleus	32.75	13.76
AT3G62670.1	Thale cress	nucleus	24.89	13.38
GSMUA_Achr10P...	Banana	nucleus	24.45	12.9
Solyc12g099380.1.1	Tomato	nucleus	30.57	12.61
CDY33920	Canola	nucleus	23.58	12.47
CDY16482	Canola	nucleus	23.58	12.27
Bra014172.1-P	Field mustard	nucleus	24.02	12.25
Bra020652.1-P	Field mustard	nucleus	23.58	12.24
VIT_07s0005g01010.t01	Wine grape	nucleus	28.38	12.17
CDX77263	Canola	nucleus	23.58	12.0
CDY05641	Canola	nucleus	23.14	11.88
PGSC0003DMT400090747	Potato	nucleus	28.82	11.81
GSMUA_Achr2P05130_001	Banana	nucleus	33.19	11.8
GSMUA_Achr10P...	Banana	nucleus	32.75	11.49
GSMUA_Achr11P...	Banana	nucleus	31.0	11.23
GSMUA_Achr3P13400_001	Banana	nucleus	30.57	11.15
GSMUA_Achr11P...	Banana	nucleus	31.44	10.93
GSMUA_Achr5P07060_001	Banana	nucleus	10.92	10.92
GSMUA_Achr8P30850_001	Banana	nucleus	33.62	10.69
GSMUA_Achr10P...	Banana	nucleus	12.66	10.39
GSMUA_Achr1P22230_001	Banana	nucleus	32.31	10.24
GSMUA_Achr9P16610_001	Banana	nucleus	31.44	9.96
Bra032275.1-P	Field mustard	nucleus	21.83	9.9
CDY29358	Canola	nucleus	21.83	9.9
CDY04335	Canola	nucleus	22.27	9.66
GSMUA_AchrUn_...	Banana	nucleus	12.66	9.51
AT1G49190.2	Thale cress	nucleus	24.45	9.0
GSMUA_Achr11P...	Banana	nucleus	10.92	8.25
GSMUA_Achr10P...	Banana	nucleus	8.3	7.92
GSMUA_Achr8P05880_001	Banana	nucleus	10.48	7.62
GSMUA_Achr5P27500_001	Banana	nucleus	8.73	7.04
GSMUA_Achr2P01920_001	Banana	nucleus, plastid	7.86	6.21
KRH60425	Soybean	nucleus	7.86	5.0
TraesCSU01G179800.1	Wheat	nucleus, plastid	1.75	1.21
TraesCSU01G196300.1	Wheat	nucleus, plastid	1.75	1.21
TraesCS7A01G539600.1	Wheat	nucleus	1.75	1.18

Protein Annotations

MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr5G13050_001	EnsemblPlants:GSMUA_Achr5P13050_001	EnsemblPlants:GSMUA_Achr5T13050_001	InterPro:IPR001789	UniProt:M0SY34	PFAM:PF00072
PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF27	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
UniParc:UPI00029564F5	SEG:seg	:	:	:	:

Description

Putative Two-component response regulator EHD1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G13050_001]

Coordinates

chr5:+:9295876..9296943

Molecular Weight (calculated)

25699.9 Da

IEP (calculated)

5.656

GRAVY (calculated)

-0.188

Length

229 amino acids

Sequence
(BLAST)

001: MWPSGLRVMV VDNDSRYLGL MERLLLQCNY QVMTCAQVQE AISLVMDNRQ SIDLIISDAF LPSDDGLLIL KSLALALDFA VIMMSWSEEF GMMMNYIAHG
101: ACDFLIKPVK IKELRNIWQH VFGNKWDSGM IRSSSLGKKQ KDCILPIREA DGVVTDVCDL KKARLQWTTQ LHQSIRGSSE RSWARQGVAK ENFGDHQSPT
201: SNKGANCQSS AEVPTAAEEV EFVDGRGEH

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.