Factsheet for GSMUA_Achr3P13400_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P09980_001
GSMUA_Achr3P31640_001
GSMUA_Achr8P18920_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31920.1	GSMUA_Achr3P31640_001	AT1G01300.1	18642946
AT4G31920.1	GSMUA_Achr11P...	AT5G03230.1	18642946
AT4G31920.1	GSMUA_Achr8P18920_001	AT5G03230.1	18642946
AT4G31920.1	GSMUA_AchrUn_...	AT5G03230.1	18642946
AT4G31920.1	GSMUA_Achr1P09980_001	AT5G11090.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	27.71	65.41
GSMUA_Achr11P...	Banana	nucleus	49.2	48.89
GSMUA_Achr2P05130_001	Banana	nucleus	49.68	48.45
GSMUA_Achr10P...	Banana	nucleus	49.84	47.93
GSMUA_Achr5P16510_001	Banana	cytosol, nucleus, plastid	15.13	43.98
GSMUA_Achr3P14630_001	Banana	cytosol	24.04	41.37
CDX87845	Canola	cytosol, extracellular	8.76	41.04
Zm00001d015521_P001	Maize	nucleus	40.76	40.57
EES06387	Sorghum	nucleus	40.61	40.41
Os02t0182100-01	Rice	nucleus	39.65	39.78
TraesCS6B01G174400.1	Wheat	nucleus	39.17	39.55
HORVU6Hr1G028680.1	Barley	nucleus	39.17	39.49
TraesCS6A01G146200.3	Wheat	nucleus	39.01	38.28
CDX72337	Canola	nucleus	31.69	38.05
TraesCS6D01G135500.3	Wheat	nucleus	39.01	37.98
CDY13465	Canola	nucleus	31.21	37.84
Bra023972.1-P	Field mustard	nucleus	31.05	37.64
Solyc07g005140.2.1	Tomato	nucleus	39.81	37.59
CDY70103	Canola	nucleus	34.39	37.44
CDX68803	Canola	nucleus	30.41	37.38
CDY35371	Canola	nucleus	34.24	37.01
Bra032035.1-P	Field mustard	nucleus	34.24	37.01
AT4G31920.1	Thale cress	nucleus	32.01	36.41
AT2G25180.1	Thale cress	nucleus	33.92	35.74
GSMUA_Achr10P...	Banana	nucleus	24.04	34.79
PGSC0003DMT400020233	Potato	nucleus	38.53	34.23
Solyc12g010330.1.1	Tomato	nucleus	38.38	34.04
PGSC0003DMT400008290	Potato	nucleus	40.29	32.73
GSMUA_Achr5P13050_001	Banana	cytosol	11.15	30.57
GSMUA_Achr8P32070_001	Banana	nucleus	24.68	28.44
GSMUA_Achr5P07060_001	Banana	nucleus	10.19	27.95
GSMUA_Achr11P...	Banana	nucleus	27.87	26.56
CDY49965	Canola	mitochondrion	13.85	25.82
GSMUA_Achr9P16610_001	Banana	nucleus	29.3	25.45
GSMUA_Achr8P30850_001	Banana	nucleus	28.5	24.86
GSMUA_Achr1P22230_001	Banana	nucleus	28.5	24.76
GSMUA_Achr10P...	Banana	nucleus	10.99	24.73
GSMUA_AchrUn_...	Banana	nucleus	11.94	24.59
GSMUA_Achr10P...	Banana	nucleus	9.08	23.75
GSMUA_Achr11P...	Banana	nucleus	10.03	20.79
GSMUA_Achr5P27500_001	Banana	nucleus	8.76	19.37
GSMUA_Achr8P05880_001	Banana	nucleus	9.55	19.05
GSMUA_Achr2P01920_001	Banana	nucleus, plastid	8.76	18.97

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G13400_001
EnsemblPlants:GSMUA_Achr3P13400_001	EnsemblPlants:GSMUA_Achr3T13400_001	InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	UniProt:M0SEA7
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874
PANTHER:PTHR43874:SF7	SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557
UniParc:UPI000296B302	SEG:seg	:	:	:	:

Description

two-component response regulator, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G13400_001]

Coordinates

chr3:+:9858705..9861684

Molecular Weight (calculated)

69668.9 Da

IEP (calculated)

6.947

GRAVY (calculated)

-0.414

Length

628 amino acids

Sequence
(BLAST)

001: MTAEERSAVK DEFPVGMRVL AVDDDPTCLK VLENLLVRCQ YNVTTTTRAT TALKLLRENR DKYDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSANGE
101: RQAVMKGITH GACDYLLKPV RMQELRNIWQ HVIRRRKSAG VQNNNVNNEE DSQKDQVTDS ESSQWVKDHN ERPKKRHKDQ NEENDSEENM QENETSSSQK
201: KPRVVWSIEL HRKFVAAVNQ LGIDKAVPKK ILDLMNVENL TRENVASHLQ ASVIPKIKYR LYLKRLSAVT GQHASVASAL RFRNLSCVNM ESLDVFRNYH
301: ALGRSRQLPS LTSLQPNGML DRVNGPSVPA GPNLLHGVPT SFHLCGSSIA NVASNFPLLQ ANKQHLEHGG LGDYSSVTMP LSSADPFDDL QDLSQLPHIG
401: IPNVTWQDAV LSTEHSANAL PGCAPFIHES LSLCQSGGDN SLQSPLAGNK NHGKYFSNVA VTPLTATQHQ VNLFGGNMMI MPAGSDDNPN IKSLGNYRQE
501: WHHTFDPNAT LGSSLCPSLP HLGVNEKILQ HQTSESSIHN KMMGAIETGQ AFGVPSLQYK CMLDKSTVEI QLNYKDDYGS ENNKSCSRVT SPGCSYGNIA
601: DVMTKPVCFL SMFLLYNLSA CSIIHSFR

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.