CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70321
CDX80857
CDX85730
CDX90023
CDY10396
CDY11244
CDY15187
CDY51107

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31920.1	CDX90023	AT1G01300.1	18642946
AT4G31920.1	CDY15187	AT1G01300.1	18642946
AT4G31920.1	CDX70321	AT5G03230.1	18642946
AT4G31920.1	CDX80857	AT5G03230.1	18642946
AT4G31920.1	CDY10396	AT5G03230.1	18642946
AT4G31920.1	CDY11244	AT5G03230.1	18642946
AT4G31920.1	CDX85730	AT5G11090.1	18642946
AT4G31920.1	CDY51107	AT5G11090.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87845	Canola	cytosol, extracellular	26.41	66.42
CDY54632	Canola	cytosol	20.77	47.3
CDX82391	Canola	cytosol	20.47	46.62
CDY54630	Canola	cytosol	20.77	45.16
CDY52720	Canola	nucleus	15.73	28.34
CDY13465	Canola	nucleus	39.76	25.87
CDX68803	Canola	nucleus	38.87	25.64
CDX72337	Canola	nucleus	39.76	25.62
AT4G31920.1	Thale cress	nucleus	35.91	21.92
CDY70103	Canola	nucleus	35.31	20.62
CDY35371	Canola	nucleus	35.31	20.48
CDY64566	Canola	nucleus	20.47	18.35
CDY09419	Canola	nucleus	20.47	18.3
CDY56439	Canola	nucleus	13.95	17.09
CDX86245	Canola	nucleus	13.65	16.85
CDY68249	Canola	nucleus	21.07	16.25
CDX75892	Canola	nucleus	21.66	16.15
CDX92102	Canola	nucleus	22.55	15.14
CDX95898	Canola	nucleus	22.55	15.05
CDY01838	Canola	nucleus	21.66	14.6
Os02t0182100-01	Rice	nucleus	26.71	14.38
EES06387	Sorghum	nucleus	26.71	14.26
Zm00001d015521_P001	Maize	nucleus	26.71	14.26
CDX96070	Canola	nucleus	21.66	14.23
CDY28869	Canola	nucleus	21.36	14.2
CDY07410	Canola	nucleus	21.36	14.15
GSMUA_Achr3P13400_001	Banana	nucleus	25.82	13.85
CDY02794	Canola	nucleus	19.58	13.84
TraesCS6B01G174400.1	Wheat	nucleus	25.52	13.83
HORVU6Hr1G028680.1	Barley	nucleus	25.52	13.8
TraesCS6A01G146200.3	Wheat	nucleus	25.52	13.44
TraesCS6D01G135500.3	Wheat	nucleus	25.52	13.33
CDX90546	Canola	nucleus	23.15	13.22
Solyc07g005140.2.1	Tomato	nucleus	25.82	13.08
PGSC0003DMT400020233	Potato	nucleus	27.3	13.01
Solyc12g010330.1.1	Tomato	nucleus	27.3	12.99
CDY09718	Canola	nucleus	22.85	12.81
CDX82389	Canola	nucleus	21.66	11.99
CDY02793	Canola	nucleus	21.66	11.66
CDY32725	Canola	nucleus	21.36	11.56
PGSC0003DMT400008290	Potato	nucleus	26.41	11.51
CDY16482	Canola	nucleus	14.54	11.14
CDX77263	Canola	nucleus	14.84	11.11
CDY11437	Canola	nucleus	13.65	10.95
CDX76652	Canola	nucleus	13.06	10.5
CDY33920	Canola	nucleus	13.35	10.39
CDY05641	Canola	nucleus	13.35	10.09
CDY29358	Canola	nucleus	13.65	9.11
CDY04335	Canola	nucleus	13.35	8.52
CDX98997	Canola	nucleus	12.76	7.18
CDY67763	Canola	nucleus	12.46	7.07
CDX73905	Canola	nucleus	2.08	7.0
CDX70016	Canola	nucleus	12.46	7.0
CDY08579	Canola	nucleus	3.86	5.37
CDX81041	Canola	nucleus	8.9	5.3
CDX78284	Canola	nucleus	8.9	5.28
CDX73907	Canola	nucleus	2.08	5.19
CDX98816	Canola	nucleus	3.86	4.98
CDY14053	Canola	nucleus	10.98	4.95
CDX80940	Canola	nucleus	3.56	4.92
CDY52133	Canola	nucleus	3.56	4.8
CDY00969	Canola	nucleus	3.86	4.58
CDX79963	Canola	nucleus	2.97	4.05
CDY53674	Canola	nucleus	2.97	4.03
CDY61256	Canola	nucleus	2.97	3.65
CDX99104	Canola	nucleus	2.97	3.45
CDX68392	Canola	nucleus	2.67	3.44
CDX86925	Canola	nucleus	6.23	3.1
CDX82988	Canola	nucleus	2.37	3.09
CDY32209	Canola	nucleus	2.67	1.91
CDY34423	Canola	nucleus	2.67	1.89
CDY36273	Canola	mitochondrion	1.19	1.67
CDY30695	Canola	nucleus	1.78	0.8

Protein Annotations

MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	GO:A0A078IGB2	UniProt:A0A078IGB2	EnsemblPlants:CDY49965
ProteinID:CDY49965	ProteinID:CDY49965.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00094152001
InterPro:IPR001789	PFAM:PF00072	PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF7	SMART:SM00448
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004EE575B	SEG:seg	:	:

Description

BnaC08g10460DBnaC08g10460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGB2]

Coordinates

chrLK032871:-:60150..63475

Molecular Weight (calculated)

38491.9 Da

IEP (calculated)

7.135

GRAVY (calculated)

-0.492

Length

337 amino acids

Sequence
(BLAST)

001: MLKVFHSFPF SASRRRQCFD YLLPLDFRLL FWLQEKEKQK GSTRISEVSR NIYPLYSHGP SFHNASVKTV VREWVDSGPF YGRGFAEPLP SSNELGRFPA
101: VKTAVPVDGR FEHIVLSCNE HQTTPSFGSN EKLSELSTFA SAANVGEREE NGDTREAEDG ETRISSKSPS NNMTVEQDFE ALDQFPVRMR VISVDDDQTC
201: LCILETLLHR CHYHVTTTEK AQTALELLKD NKNKFNLVIS DIDMPHMDGF KLLELLGLEM DLPIILLSAH SHPKYVMEGV KRSACDYLLR SVRIEELKNI
301: WQHMVRKSMF KKMKNILTNG ESQGNSDQNG LKANRKT

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.