Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32209 | Canola | nucleus | 94.53 | 95.13 |
| CDY09718 | Canola | nucleus | 67.16 | 53.08 |
| CDX90546 | Canola | nucleus | 63.58 | 51.19 |
| CDX92102 | Canola | nucleus | 49.68 | 47.01 |
| CDX95898 | Canola | nucleus | 49.89 | 46.93 |
| CDX82389 | Canola | nucleus | 57.26 | 44.66 |
| CDX75892 | Canola | nucleus | 41.68 | 43.81 |
| CDY52720 | Canola | nucleus | 17.05 | 43.32 |
| CDX73905 | Canola | nucleus | 7.58 | 36.0 |
| Solyc01g065540.2.1 | Tomato | nucleus | 48.42 | 33.97 |
| KRH12005 | Soybean | nucleus | 47.37 | 33.48 |
| PGSC0003DMT400065835 | Potato | nucleus | 47.37 | 33.33 |
| KRH37035 | Soybean | nucleus | 46.32 | 32.69 |
| CDX73907 | Canola | nucleus | 7.16 | 25.19 |
| CDY64566 | Canola | nucleus | 17.26 | 21.81 |
| CDY09419 | Canola | nucleus | 17.05 | 21.49 |
| CDX79963 | Canola | nucleus | 10.32 | 19.84 |
| CDY53674 | Canola | nucleus | 10.32 | 19.76 |
| CDY08579 | Canola | nucleus | 9.68 | 19.01 |
| CDX80940 | Canola | nucleus | 9.68 | 18.85 |
| CDY36273 | Canola | mitochondrion | 9.47 | 18.83 |
| CDY52133 | Canola | nucleus | 9.68 | 18.4 |
| CDY68249 | Canola | nucleus | 16.84 | 18.31 |
| CDX82988 | Canola | nucleus | 9.89 | 18.15 |
| CDX98816 | Canola | nucleus | 9.89 | 18.01 |
| CDX68392 | Canola | nucleus | 9.68 | 17.56 |
| CDY56439 | Canola | nucleus | 10.11 | 17.45 |
| CDY00969 | Canola | nucleus | 10.32 | 17.25 |
| CDX86245 | Canola | nucleus | 9.89 | 17.22 |
| CDY61256 | Canola | nucleus | 9.89 | 17.15 |
| CDX99104 | Canola | nucleus | 10.32 | 16.9 |
| CDY35371 | Canola | nucleus | 20.42 | 16.7 |
| CDY70103 | Canola | nucleus | 20.0 | 16.46 |
| CDY28869 | Canola | nucleus | 17.26 | 16.17 |
| CDY07410 | Canola | nucleus | 17.26 | 16.11 |
| CDY13465 | Canola | nucleus | 17.47 | 16.02 |
| CDX96070 | Canola | nucleus | 17.26 | 15.98 |
| CDY01838 | Canola | nucleus | 16.63 | 15.8 |
| CDY33920 | Canola | nucleus | 14.32 | 15.7 |
| CDY02794 | Canola | nucleus | 15.58 | 15.51 |
| CDX72337 | Canola | nucleus | 16.84 | 15.3 |
| CDY05641 | Canola | nucleus | 14.11 | 15.02 |
| CDX82391 | Canola | cytosol | 4.63 | 14.86 |
| CDY54632 | Canola | cytosol | 4.63 | 14.86 |
| CDX81041 | Canola | nucleus | 17.68 | 14.84 |
| CDX78284 | Canola | nucleus | 17.47 | 14.61 |
| CDX68803 | Canola | nucleus | 15.58 | 14.48 |
| GSMUA_Achr5P16510_001 | Banana | cytosol, nucleus, plastid | 6.53 | 14.35 |
| CDY16482 | Canola | nucleus | 13.05 | 14.09 |
| CDX70016 | Canola | nucleus | 17.47 | 13.83 |
| CDY11437 | Canola | nucleus | 12.21 | 13.81 |
| CDX98997 | Canola | nucleus | 17.26 | 13.69 |
| CDY67763 | Canola | nucleus | 17.05 | 13.64 |
| CDX76652 | Canola | nucleus | 12.0 | 13.6 |
| CDY54630 | Canola | cytosol | 4.42 | 13.55 |
| CDX77263 | Canola | nucleus | 12.63 | 13.33 |
| CDY32725 | Canola | nucleus | 17.47 | 13.32 |
| CDY02793 | Canola | nucleus | 17.26 | 13.1 |
| CDY04335 | Canola | nucleus | 13.89 | 12.5 |
| CDY29358 | Canola | nucleus | 12.42 | 11.68 |
| CDY14053 | Canola | nucleus | 16.84 | 10.7 |
| CDY30695 | Canola | nucleus | 13.89 | 8.76 |
| CDX86925 | Canola | nucleus | 12.42 | 8.71 |
| CDX87845 | Canola | cytosol, extracellular | 1.68 | 5.97 |
| CDY49965 | Canola | mitochondrion | 1.89 | 2.67 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:11.4.2.4 | MapMan:15.5.23 | GO:A0A078HCB2 | UniProt:A0A078HCB2 | EnsemblPlants:CDY34423 |
| ProteinID:CDY34423 | ProteinID:CDY34423.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00056495001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR43874 | PANTHER:PTHR43874:SF23 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE07D9 |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g22100DBnaC01g22100D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078HCB2]
Coordinates
chrLK032334:+:3..2074
Molecular Weight (calculated)
51962.4 Da
IEP (calculated)
6.455
GRAVY (calculated)
-0.716
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: QHVVRKKRNE WNVSEHSGSV EETGQREDGD NNSSSANNEG SWRSSRKRKE EEVDEQGGDD KEDTSSLKKP RVVWSVELHQ QFVAAVNQLG VDKAVPKKIL
101: EMMNVPGLTR ENVASHLQKY RIYLRRLGGV SQHQGNMNHS FMTGQDPSFG PLSTLNGFDL QALAAAGQLP AQSLAQLQAA GLARPPSLSK PGMSVDQRSI
201: FSFENPKIRH GQMMNSGGGG NKQMNLLHGV PMGMEPRQFA GGGQMRNVQS SGMMMPVGGG PSMLQQQQVM LSSSVPRRSE TSSGSRVLPA AATTQSVVFN
301: NFSSELPRNS FPLANAPGIS VSYQEEVNSS DAKGGAGFGN PSYDIFNDYP QQYNNNNDWD LQNIGMVFNS HQDTTASAAF SSSSSTQRTR AEHVQNHHQQ
401: QQFPSQSLNH MNGGGSVRVK SERVAETVTC PPATTLFQEQ YNQEDLMSAL LKQEGLPLVD NEFDFDGYSL DNIPV
101: EMMNVPGLTR ENVASHLQKY RIYLRRLGGV SQHQGNMNHS FMTGQDPSFG PLSTLNGFDL QALAAAGQLP AQSLAQLQAA GLARPPSLSK PGMSVDQRSI
201: FSFENPKIRH GQMMNSGGGG NKQMNLLHGV PMGMEPRQFA GGGQMRNVQS SGMMMPVGGG PSMLQQQQVM LSSSVPRRSE TSSGSRVLPA AATTQSVVFN
301: NFSSELPRNS FPLANAPGIS VSYQEEVNSS DAKGGAGFGN PSYDIFNDYP QQYNNNNDWD LQNIGMVFNS HQDTTASAAF SSSSSTQRTR AEHVQNHHQQ
401: QQFPSQSLNH MNGGGSVRVK SERVAETVTC PPATTLFQEQ YNQEDLMSAL LKQEGLPLVD NEFDFDGYSL DNIPV
001: MALSLLRKNK HGFDIVISDV HMPDMDGFKL LEHVGLEMDL PVIMMSADDS KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE
101: ETGERQQQQH RGGGGGAAVS GGEDAVDDNS SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL
201: MNVPGLTREN VASHLQKYRI YLRRLGGVSQ HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER
301: SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS
401: NRISERSGFS GRNNIPESSR VLPTSYTNLT TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN
501: IGIAFDSHQD SESAAFSASE AYSSSSMSRH NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQEG
601: IAPVDGEFDF DAYSIDNIPV
101: ETGERQQQQH RGGGGGAAVS GGEDAVDDNS SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL
201: MNVPGLTREN VASHLQKYRI YLRRLGGVSQ HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER
301: SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS
401: NRISERSGFS GRNNIPESSR VLPTSYTNLT TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN
501: IGIAFDSHQD SESAAFSASE AYSSSSMSRH NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQEG
601: IAPVDGEFDF DAYSIDNIPV
Arabidopsis Description
ARR1Two-component response regulator ARR1 [Source:UniProtKB/Swiss-Prot;Acc:Q940D0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.