Factsheet for PGSC0003DMT400065835

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g065540.2.1	Tomato	nucleus	94.81	94.53
CDY52720	Canola	nucleus	21.04	75.94
PGSC0003DMT400060506	Potato	nucleus	74.22	75.57
Bra001641.1-P	Field mustard	cytosol	16.0	72.97
CDY54630	Canola	cytosol	16.44	71.61
CDY54632	Canola	cytosol	15.56	70.95
CDX82391	Canola	cytosol	15.41	70.27
KRH12005	Soybean	nucleus	61.19	61.46
KRH37035	Soybean	nucleus	60.3	60.48
CDX75892	Canola	nucleus	38.67	57.74
CDX92102	Canola	nucleus	42.67	57.37
CDX95898	Canola	nucleus	42.81	57.23
Bra033527.1-P	Field mustard	nucleus	50.22	53.55
CDY09718	Canola	nucleus	46.22	51.91
Bra012743.1-P	Field mustard	nucleus	45.48	51.86
CDX90546	Canola	nucleus	44.59	51.02
CDX82389	Canola	nucleus	44.44	49.26
Bra022183.1-P	Field mustard	nucleus	49.33	48.9
AT3G16857.2	Thale cress	nucleus	49.93	48.84
Bra001643.1-P	Field mustard	nucleus	46.67	48.46
CDY34423	Canola	nucleus	33.33	47.37
CDY32209	Canola	nucleus	33.04	47.25
PGSC0003DMT400090747	Potato	nucleus	36.3	43.83
GSMUA_Achr5P16510_001	Banana	cytosol, nucleus, plastid	12.3	38.43
PGSC0003DMT400075907	Potato	nucleus	36.44	37.67
PGSC0003DMT400020233	Potato	nucleus	32.74	31.26
PGSC0003DMT400031260	Potato	nucleus	26.67	31.03
PGSC0003DMT400035788	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	9.78	30.41
PGSC0003DMT400072213	Potato	nucleus	10.96	27.82
PGSC0003DMT400018485	Potato	nucleus	11.41	26.55
PGSC0003DMT400008290	Potato	nucleus	29.93	26.13
PGSC0003DMT400005490	Potato	nucleus	10.81	24.17
PGSC0003DMT400089008	Potato	nucleus	19.7	22.81
PGSC0003DMT400077979	Potato	nucleus	10.07	21.66

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102578736	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily
GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	UniProt:M1CEN4	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG401025624	PGSC:PGSC0003DMG401025624	EnsemblPlants:PGSC0003DMT400065835
PIRSF:PIRSF036392	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF23	InterPro:Response_reg_B-typ_pln
InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557
UniParc:UPI000295577C	RefSeq:XP_006363579.1	RefSeq:XP_006363580.1	SEG:seg	:	:

Description

Type-B response regulator [Source:PGSC_GENE;Acc:PGSC0003DMG401025624]

Coordinates

chr1:+:11998016..12004657

Molecular Weight (calculated)

74656.9 Da

IEP (calculated)

6.333

GRAVY (calculated)

-0.564

Length

675 amino acids

Sequence
(BLAST)

001: MNIGSGSVLS STGSWKSGDV VSDQFPVGLR VLVVDDDPTC LKILEKMLRN CHYEVTKCNR AEVALSYLRE NKNGFDIVIS DVHMPDMDGF KLLEHIGLEM
101: DLPVIMMSAD DSKDVVMKGV THGAYDYLIK PVRIEALKNI WQHVVRKRKQ EWRDNNFDQS GSVEEGDRQQ KQSEDVDYSS SANEGNWKNS KKRKEEDEEG
201: EERDDTSSQK KPRVVWSVEL HQQFVQAVHQ LGIDKAVPKK ILELMNVPGL TRENVASHLQ KYRLYLRRLS CVSQHQNGLN NSFMGRPDAT FGTISSLNGL
301: DLQAIAAAGQ IPAQSLATLQ AAALGRSATK SAISIPLVDQ RNLFSFENSQ VRFPEGQQQL NNSNKQIDLL HGIPTTMEPK QLANLHHPSQ TFVGMNMQVN
401: SMAQHNNSVV MRMPQSQPTA QMLCGANNGS QASRLPLSMQ QSLSSEGIPG AVLARCRIVD NARASVYNPV SQASSMVDFS VNQSKELQNY NFSLGSNSSG
501: MSTLTNRGML QEEANSDIKG SRGFPTNYDI FNDLHQPKLQ NWGLQNVGSS FDSSHHPSIQ GTQGLSSQLL LQQGISSTHN NGQNRNGPIG KPMYTNGEES
601: GHTNLMGGQQ LNSVSRNMLA VKAERFPDAD YQSTNFPEQF GQDDLMSAFL KQQGSVGPVE TEFGFDGYTL DNLPV

Best Arabidopsis Sequence Match ( AT3G16857.2 )
(BLAST)

001: MMNPSHGRGL GSAGGSSSGR NQGGGGETVV EMFPSGLRVL VVDDDPTCLM ILERMLRTCL YEVTKCNRAE MALSLLRKNK HGFDIVISDV HMPDMDGFKL
101: LEHVGLEMDL PVIMMSADDS KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE ETGERQQQQH RGGGGGAAVS GGEDAVDDNS
201: SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL MNVPGLTREN VASHLQKYRI YLRRLGGVSQ
301: HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN
401: LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS NRISERSGFS GRNNIPESSR VLPTSYTNLT
501: TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN IGIAFDSHQD SESAAFSASE AYSSSSMSRH
601: NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQEG IAPVDGEFDF DAYSIDNIPV

Arabidopsis Description

ARR1Two-component response regulator ARR1 [Source:UniProtKB/Swiss-Prot;Acc:Q940D0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.