Factsheet for PGSC0003DMT400035788

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g019550.1.1	Tomato	nucleus	82.49	48.77
VIT_16s0100g00420.t01	Wine grape	nucleus	34.56	12.67
PGSC0003DMT400090747	Potato	nucleus	30.88	11.99
PGSC0003DMT400031260	Potato	nucleus	29.95	11.21
CDY67763	Canola	nucleus	29.03	10.61
PGSC0003DMT400060506	Potato	nucleus	30.88	10.11
CDX98997	Canola	nucleus	27.65	10.02
CDX70016	Canola	nucleus	27.65	10.0
AT2G27070.1	Thale cress	nucleus	25.81	9.79
PGSC0003DMT400065835	Potato	nucleus	30.41	9.78
PGSC0003DMT400075907	Potato	nucleus	28.57	9.49
KRH09142	Soybean	nucleus	29.03	9.42
AT5G07210.1	Thale cress	nucleus	26.27	9.18
CDX81041	Canola	nucleus	23.04	8.83
CDX78284	Canola	nucleus	23.04	8.8
PGSC0003DMT400020233	Potato	nucleus	28.57	8.77
PGSC0003DMT400089008	Potato	nucleus	23.04	8.58
VIT_16s0100g00430.t01	Wine grape	nucleus	19.35	8.45
Bra028705.1-P	Field mustard	nucleus	29.03	8.21
PGSC0003DMT400008290	Potato	nucleus	28.57	8.02
PGSC0003DMT400018485	Potato	nucleus	10.6	7.93
Bra005928.1-P	Field mustard	nucleus	27.65	7.91
PGSC0003DMT400072213	Potato	nucleus	9.68	7.89
Bra009284.1-P	Field mustard	nucleus	27.65	7.76
CDY14053	Canola	nucleus	26.73	7.75
PGSC0003DMT400077979	Potato	nucleus	11.06	7.64
PGSC0003DMT400005490	Potato	nucleus	10.6	7.62
CDX86925	Canola	nucleus	20.28	6.5
KRH38615	Soybean	nucleus	12.9	5.3
CDY30695	Canola	nucleus	9.22	2.66

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:107063451	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:IPR001789	UniProt:M1B2U4	PFAM:PF00072	EnsemblPlantsGene:PGSC0003DMG400013776	PGSC:PGSC0003DMG400013776
EnsemblPlants:PGSC0003DMT400035788	PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF19	SMART:SM00448	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI00029498E6	RefSeq:XP_015170840.1	SEG:seg	:	:

Description

Two-component system sensor histidine kinase/response regulator [Source:PGSC_GENE;Acc:PGSC0003DMG400013776]

Coordinates

chr7:+:12635684..12637807

Molecular Weight (calculated)

24438.3 Da

IEP (calculated)

7.198

GRAVY (calculated)

-0.392

Length

217 amino acids

Sequence
(BLAST)

001: MEEQNNQLFE IIRCLVVDVD VTCLLITATF LKKSKFEVVT VKSAKDALGV LRGSGLSFDL VVTEVHMPKM NGFQLQQEIA KEFIIPVAFL SADEKESTIM
101: KGLESGVILF MGKPISQNNI NYLWNYATVG KNHKGKHVIN QQNQDNTNER IPHEVIHIES SSSNSERDKS MRKCEETESE QSSSPPSKKS RVVWTDPLHD
201: KFVEVVSKLG MKSKSSH

Best Arabidopsis Sequence Match ( AT2G01760.1 )
(BLAST)

001: MPINDQFPSG LRILVVDDDT SCLFILEKML LRLMYQVTIC SQADVALTIL RERKDSFDLV LSDVHMPGMN GYNLLQQVGL LEMDLPVIMM SVDGRTTTVM
101: TGINHGACDY LIKPIRPEEL KNIWQHVVRR KCVMKKELRS SQALEDNKNS GSLETVVVSV SECSEESLMK CRNKKKKKKR SVDRDDNEDD LLLDPGNSKK
201: SRVVWSIELH QQFVNAVNKL GIDKAVPKRI LELMNVPGLS RENVASHLQK FRLYLKRLSG EASQSNDSES TKRYENIQAL VSSGQLHPQT LAALFGQPID
301: NHHSASFGVW IPNDNLGRSQ NEHFSVDVSS ASNRPVSVAV HGLSSSANFR QRGDVNNNRI RQGYGSNVNE ESWILERSSR QR

Arabidopsis Description

ARR14response regulator 14 [Source:TAIR;Acc:AT2G01760]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.