Factsheet for PGSC0003DMT400031260

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014260.2.1	Tomato	nucleus	91.38	91.22
GSMUA_Achr3P14630_001	Banana	cytosol	34.66	55.07
KRG97483	Soybean	nucleus	41.55	52.97
VIT_01s0010g02230.t01	Wine grape	nucleus	52.07	50.84
AT1G67710.1	Thale cress	nucleus	44.14	49.14
CDY07410	Canola	nucleus	43.1	49.12
Bra004076.1-P	Field mustard	nucleus	43.1	49.12
CDX96070	Canola	nucleus	43.28	48.93
CDY28869	Canola	nucleus	42.76	48.92
CDY01838	Canola	nucleus	41.9	48.6
Bra004245.1-P	Field mustard	nucleus	42.76	48.44
KRH31403	Soybean	nucleus	48.1	46.19
GSMUA_Achr8P32070_001	Banana	nucleus	40.34	42.94
TraesCS3B01G423600.1	Wheat	nucleus	41.21	40.92
TraesCS3A01G391600.1	Wheat	nucleus	41.03	40.75
Os01t0904700-01	Rice	nucleus	40.17	40.03
EES04061	Sorghum	nucleus	39.48	39.55
TraesCS3D01G384500.2	Wheat	nucleus	41.03	38.2
Zm00001d012128_P001	Maize	nucleus	39.14	37.65
Zm00001d042463_P001	Maize	nucleus	38.79	36.59
PGSC0003DMT400035788	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	11.21	29.95
PGSC0003DMT400060506	Potato	nucleus	30.52	26.7
PGSC0003DMT400065835	Potato	nucleus	31.03	26.67
PGSC0003DMT400075907	Potato	nucleus	28.28	25.11
PGSC0003DMT400020233	Potato	nucleus	29.83	24.47
PGSC0003DMT400090747	Potato	nucleus	23.28	24.15
PGSC0003DMT400008290	Potato	nucleus	29.31	21.99
PGSC0003DMT400072213	Potato	nucleus	10.0	21.8
PGSC0003DMT400018485	Potato	nucleus	10.0	20.0
PGSC0003DMT400077979	Potato	nucleus	10.69	19.75
PGSC0003DMT400005490	Potato	nucleus	10.17	19.54
PGSC0003DMT400089008	Potato	nucleus	17.24	17.15

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102593308	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily
GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009719	GO:GO:0009735	GO:GO:0009987	GO:GO:0010082
GO:GO:0040007	InterPro:Homeobox-like_sf	InterPro:IPR001789	UniProt:M1AVF1	InterPro:Myb_dom_plants	PFAM:PF00072
PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400011980	PGSC:PGSC0003DMG400011980	EnsemblPlants:PGSC0003DMT400031260	PIRSF:PIRSF036392	PFscan:PS50110
PANTHER:PTHR43874	PANTHER:PTHR43874:SF27	InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI000296B20B	:	:

Description

Two-component sensor histidine kinase bacteria [Source:PGSC_GENE;Acc:PGSC0003DMG400011980]

Coordinates

chr5:+:11541210..11546514

Molecular Weight (calculated)

65214.4 Da

IEP (calculated)

6.555

GRAVY (calculated)

-0.505

Length

580 amino acids

Sequence
(BLAST)

001: MENSKTSAGF SSPRTDTFPA GLRVLVVDDD PTWLKILEKM LKKCSYQVTT CGLAREALHV LRERKDGFDI VISDVNMPDM DGFKLLEHVG LEMDLPVIMM
101: SVDGETSRVM KGVQHRACDY LLKPIRMKEL RNIWQHVLRK KMQEARDAGN HELDQYDEVW MLNGAEILSG KKRKDFENKH DEIEMSDSRF VDSSSMKKAR
201: VVWTVDLHQK FVKAVNHIGF DKVGPKKILD LMGVPWLTRE NVASHLQKYR LYLTRLQKED EAKDSFGGMK HPDVSSQEIC SSLSLQNPVD VYTDVTNDKY
301: VCVSGDKAIV QNGKSNIYES KVKGVVSVPA AEAKSVIEDN FDSQTAGSKI GLKDSFGLVN TDVKSSKVPT PYCSTGEAPQ PQYKQQDFKP HFQSANGLSH
401: QPLPVVSHQI PVDRTQVTCF VNHIPSHEER DRHPDTRNKP SFFKTKNGVG KFSPVESNVN LFQPVSHQQT NFHTLEQMPS TTWRATSHNV VNGSQSSLGN
501: LTLRSGSIVA SVGEEIFGAS VQGECFLANN GLPNIEQFDY NDPQPISGVP TYLYDTLRFD YEYPIDSLEG NMMDQGLFIV

Best Arabidopsis Sequence Match ( AT1G67710.1 )
(BLAST)

001: MEKSGFSPVG LRVLVVDDDP TWLKILEKML KKCSYEVTTC GLAREALRLL RERKDGYDIV ISDVNMPDMD GFKLLEHVGL ELDLPVIMMS VDGETSRVMK
101: GVQHGACDYL LKPIRMKELK IIWQHVLRKK LQEVRDIEGC GYEGGADWIT RYDEAHFLGG GEDVSFGKKR KDFDFEKKLL QDESDPSSSS SKKARVVWSF
201: ELHHKFVNAV NQIGCDHKAG PKKILDLMNV PWLTRENVAS HLQKYRLYLS RLEKGKELKC YSGGVKNADS SPKDVEVNSG YQSPGRSSYV FSGGNSLIQK
301: ATEIDPKPLA SASLSDLNTD VIMPPKTKKT RIGFDPPISS SAFDSLLPWN DVPEVLESKP VLYENSFLQQ QPLPSQSSYV ANSAPSLMEE EMKPPYETPA
401: GGSSVNADEF LMPQDKIPTV TLQDLDPSAM KLQEFNTEAI LRSLNWELPE SHHSVSLDTD LDLTWLQGER FLANTGLQFQ DYSSSPSLLS ELPAHLNWYG
501: NERLPDPDEY SFMVDQGLFI S

Arabidopsis Description

ARR11Two-component response regulator [Source:UniProtKB/TrEMBL;Acc:Q0WRT0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.