Factsheet for PGSC0003DMT400060506

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054390.2.1	Tomato	nucleus	97.74	97.74
PGSC0003DMT400065835	Potato	nucleus	75.57	74.22
PGSC0003DMT400090747	Potato	nucleus	35.75	42.4
GSMUA_Achr5P16510_001	Banana	cytosol, nucleus, plastid	12.67	38.89
PGSC0003DMT400075907	Potato	nucleus	36.65	37.21
PGSC0003DMT400020233	Potato	nucleus	34.09	31.97
PGSC0003DMT400035788	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	10.11	30.88
PGSC0003DMT400031260	Potato	nucleus	26.7	30.52
PGSC0003DMT400072213	Potato	nucleus	11.46	28.57
PGSC0003DMT400008290	Potato	nucleus	32.28	27.68
PGSC0003DMT400018485	Potato	nucleus	11.61	26.55
PGSC0003DMT400005490	Potato	nucleus	10.86	23.84
PGSC0003DMT400077979	Potato	nucleus	11.01	23.25
PGSC0003DMT400089008	Potato	nucleus	19.91	22.64

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102586468	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily
GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	UniProt:M1C607	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400023534	PGSC:PGSC0003DMG400023534	EnsemblPlants:PGSC0003DMT400060506
PIRSF:PIRSF036392	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF23	InterPro:Response_reg_B-typ_pln
InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557
UniParc:UPI000296FA10	RefSeq:XP_006345976.1	SEG:seg	:	:	:

Description

Type-B response regulator [Source:PGSC_GENE;Acc:PGSC0003DMG400023534]

Coordinates

chr5:+:50112914..50120114

Molecular Weight (calculated)

73442.9 Da

IEP (calculated)

5.866

GRAVY (calculated)

-0.553

Length

663 amino acids

Sequence
(BLAST)

001: MNLGVGSVVK TMSGASCSVS WKSGGSDKVS DQFPAGLRVL VVDDDPTCLM ILEKMLRNCH YEVTKSNRAE HALSMLRENR NGFDIVISDV HMPDMDGFKL
101: LEHVGLEMDL PVIMMSADDS KDVVMKGVTH GACDYLIKPV RIEALKNIWQ HVIRKKKHEL KDKDFDQSTS VEDGDQQQKP PEDVDYSSSA NEGNWKSSKR
201: RKEEEDETEE RDDLSTSKKP RVVWSVELHQ QFVQAVNQLG IDKAVPKKIL ELMNVPGLTR ENVASHLQKY RLYLRRLSGV SQHQNGLNNS FMGHPEATYG
301: TMTSFNGLEL QALAATGQLP AQSLATLQAA ALGRSATKSA ISMPLVDQRN LFSFENPKLR FSEGQQQLNN SNKQINLLHG IPTTMEPKQL ADLHQSSQSF
401: VAMNMQGNAR MQQNNALLMH MSQQQQQSSR AQMLNETNNG QVSRPPLSMS QPAAVLSRNS IVDNVRGPIY NPVSQTSSMV DFSLNQTTEL QNNSFPLVSS
501: NSGMSTLTSK RLLQEEVNSD IKGSRGFPPG YDIFEELHQQ KTQDWGLPNI GSNFSASDHS SIPGTLDVSP SMLVQQGISS MKKNGQNGNY PMGGPQLNLF
601: SGGNLLPVKA EQLPDTSYQN TFFPEQFGQD DLMSALLKQQ ESVGQVETEF GFDGYSPLDN LPV

Best Arabidopsis Sequence Match ( AT3G16857.2 )
(BLAST)

001: MMNPSHGRGL GSAGGSSSGR NQGGGGETVV EMFPSGLRVL VVDDDPTCLM ILERMLRTCL YEVTKCNRAE MALSLLRKNK HGFDIVISDV HMPDMDGFKL
101: LEHVGLEMDL PVIMMSADDS KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE ETGERQQQQH RGGGGGAAVS GGEDAVDDNS
201: SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL MNVPGLTREN VASHLQKYRI YLRRLGGVSQ
301: HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN
401: LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS NRISERSGFS GRNNIPESSR VLPTSYTNLT
501: TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN IGIAFDSHQD SESAAFSASE AYSSSSMSRH
601: NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQEG IAPVDGEFDF DAYSIDNIPV

Arabidopsis Description

ARR1Two-component response regulator ARR1 [Source:UniProtKB/Swiss-Prot;Acc:Q940D0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.