Factsheet for PGSC0003DMT400075907

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008050.2.1	Tomato	nucleus	93.42	93.27
VIT_01s0011g05830.t01	Wine grape	nucleus	64.62	60.37
KRH70359	Soybean	nucleus	52.53	54.19
KRH49669	Soybean	nucleus	52.07	53.71
CDY64566	Canola	nucleus	28.33	49.2
Bra026635.1-P	Field mustard	nucleus	28.33	49.07
CDY09419	Canola	nucleus	28.33	49.07
AT2G01760.2	Thale cress	nucleus	29.4	46.83
CDY68249	Canola	nucleus	28.48	42.56
Os03t0224200-01	Rice	nucleus	41.19	38.93
TraesCS4D01G239900.1	Wheat	nucleus	40.74	38.89
TraesCS4A01G063100.1	Wheat	nucleus	40.74	38.89
HORVU4Hr1G066480.1	Barley	nucleus	40.58	38.74
TraesCS4B01G240100.1	Wheat	nucleus	40.43	38.6
OQU92974	Sorghum	nucleus	40.43	38.48
Zm00001d048046_P001	Maize	nucleus	40.12	38.19
GSMUA_Achr1P22230_001	Banana	nucleus	42.11	38.04
Zm00001d028265_P002	Maize	nucleus	40.43	37.71
PGSC0003DMT400060506	Potato	nucleus	37.21	36.65
GSMUA_Achr8P30850_001	Banana	nucleus	40.28	36.53
PGSC0003DMT400065835	Potato	nucleus	37.67	36.44
PGSC0003DMT400090747	Potato	nucleus	24.81	28.98
PGSC0003DMT400035788	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	9.49	28.57
PGSC0003DMT400031260	Potato	nucleus	25.11	28.28
PGSC0003DMT400020233	Potato	nucleus	29.86	27.58
PGSC0003DMT400008290	Potato	nucleus	31.85	26.91
PGSC0003DMT400072213	Potato	nucleus	10.11	24.81
PGSC0003DMT400077979	Potato	nucleus	11.79	24.52
PGSC0003DMT400005490	Potato	nucleus	11.33	24.5
PGSC0003DMT400018485	Potato	nucleus	10.26	23.1
PGSC0003DMT400089008	Potato	nucleus	17.0	19.04

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	UniProt:M1CVX0	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00072	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400029514	PGSC:PGSC0003DMG400029514	EnsemblPlants:PGSC0003DMT400075907	PIRSF:PIRSF036392
PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF32	InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb
SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI000295D07B
SEG:seg	:	:	:	:	:

Description

Two-component sensor histidine kinase bacteria [Source:PGSC_GENE;Acc:PGSC0003DMG400029514]

Coordinates

chr4:+:2708975..2716444

Molecular Weight (calculated)

71396.4 Da

IEP (calculated)

6.559

GRAVY (calculated)

-0.340

Length

653 amino acids

Sequence
(BLAST)

001: MSGDVATCKS EATVVTDHFP LGLRVLVVDD DVVCLRIIEQ MLRRCKYSVT TCTQAMVALN LLREKRGTFD IVLSDVHMPD MDGFKLLELV GLEMDLPVIM
101: MSGDGRTNLV MRGVQHGACD YLIKPIRDEE LKNIWQHVVR KRYNSSKELE CSGSLDDNDR YKRGSDDAEC ASSVIEGADG VLKPQKKKRE AKEEDDTEME
201: NDDPSTSKKP RVVWSVELHQ QFVSAVNQLG IDKAVPKRIL ELMNVPGLTR ENVASHLQEN QKFRLYLKRL SGVVQQQGGL PSTFCGPIEQ NSELGSLGRF
301: DIQALAASGQ IPPETLTALH AELLGRSTSN LVLPAVEIQN LLQASLQQAK CIPADQVMAY GQPLLKCHPS ISNSKHLSQS ILSAEDVHSG FGSQRAKNIC
401: LVPSSNPIGL AAPNSNMLMA MMQQQQWQKQ QQMELQHRRS GPPEVNHSIN VQPSCLVLPS QLPGNFQVGD SPASISRAGS LSKSSVIDYG VLSPQSNNSS
501: GVVQVLDREL KPECGLNRLP SGGSLSRSCS INADNSVGLQ LHNSSSAFGS SKQLPALIPN HLGSPVPYYI NSSQVLDQGH TRNPGVGKCA SIPSRFAVDE
601: SDSPMCNFNT AKNYLEETKV KQEPNMNVME NAKVGPAIFQ KFQPGDLMSV FSD

Best Arabidopsis Sequence Match ( AT3G16857.1 )
(BLAST)

001: MMNPSHGRGL GSAGGSSSGR NQGGGGETVV EMFPSGLRVL VVDDDPTCLM ILERMLRTCL YEVTKCNRAE MALSLLRKNK HGFDIVISDV HMPDMDGFKL
101: LEHVGLEMDL PVIMMSADDS KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE ETGERQQQQH RGGGGGAAVS GGEDAVDDNS
201: SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL MNVPGLTREN VASHLQKYRI YLRRLGGVSQ
301: HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN
401: LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS NRISERSGFS GRNNIPESSR VLPTSYTNLT
501: TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN IGIAFDSHQD SESAAFSASE AYSSSSMSRH
601: NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQV

Arabidopsis Description

ARR1Two-component response regulator ARR1 [Source:UniProtKB/Swiss-Prot;Acc:Q940D0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.