Factsheet for TraesCS4A01G063100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G239900.1	Wheat	nucleus	98.54	98.54
TraesCS4B01G240100.1	Wheat	nucleus	98.39	98.39
HORVU4Hr1G066480.1	Barley	nucleus	96.34	96.34
Os03t0224200-01	Rice	nucleus	84.8	83.94
OQU92974	Sorghum	nucleus	78.95	78.72
Zm00001d048046_P001	Maize	nucleus	76.9	76.68
Zm00001d028265_P002	Maize	nucleus	77.19	75.43
GSMUA_Achr1P22230_001	Banana	nucleus	53.8	50.9
CDY64566	Canola	nucleus	27.78	50.53
Bra026635.1-P	Field mustard	nucleus	27.63	50.13
CDY09419	Canola	nucleus	27.63	50.13
GSMUA_Achr8P30850_001	Banana	nucleus	51.75	49.17
TraesCS7A01G539700.1	Wheat	cytosol, nucleus, plastid	7.75	47.75
AT2G01760.2	Thale cress	nucleus	28.51	47.56
TraesCS7A01G510400.1	Wheat	cytosol	5.7	46.43
CDY68249	Canola	nucleus	27.78	43.48
KRH70359	Soybean	nucleus	39.47	42.65
VIT_01s0011g05830.t01	Wine grape	nucleus	43.42	42.49
KRH49669	Soybean	nucleus	39.04	42.18
PGSC0003DMT400075907	Potato	nucleus	38.89	40.74
Solyc04g008050.2.1	Tomato	nucleus	38.89	40.67
TraesCS6A01G146200.3	Wheat	nucleus	27.63	29.53
TraesCS3A01G361800.1	Wheat	nucleus, plastid	9.36	28.44
TraesCS6A01G359200.1	Wheat	nucleus	27.78	28.11
TraesCS7A01G146500.1	Wheat	nucleus	24.56	27.77
TraesCS3A01G391600.1	Wheat	nucleus	23.68	27.74
TraesCS7A01G146400.1	Wheat	nucleus	24.42	27.2
TraesCS7A01G146700.1	Wheat	nucleus	25.29	26.25
TraesCS7A01G510300.1	Wheat	nucleus	18.71	25.65
TraesCS7A01G511300.1	Wheat	nucleus	19.88	23.82
TraesCS3A01G473600.1	Wheat	nucleus	19.88	23.82
TraesCS7A01G511100.1	Wheat	nucleus	19.59	23.47
TraesCS3A01G526600.1	Wheat	nucleus	9.65	23.16
TraesCS7A01G502300.1	Wheat	nucleus	19.01	22.93
TraesCS1A01G258400.1	Wheat	nucleus	9.94	21.79
TraesCS3A01G473800.1	Wheat	nucleus	16.52	20.04
TraesCS7A01G539600.1	Wheat	nucleus	4.39	8.88

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072
PFAM:PF00249	PIRSF:PIRSF036392	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF32
InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
TIGRFAMs:TIGR01557	EnsemblPlantsGene:TraesCS4A01G063100	EnsemblPlants:TraesCS4A01G063100.1	TIGR:cd00156	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:59672534..59678073

Molecular Weight (calculated)

73664.1 Da

IEP (calculated)

6.660

GRAVY (calculated)

-0.436

Length

684 amino acids

Sequence
(BLAST)

001: MAPPEEAGGG DQFPVGMKVL VVDDDQTCLA VLKRMLVQCR YDATTCSQAT RALAMLRENR GAFDVIISDV HMPDMNGFRL LELVGLEMDL PVIMMSADSR
101: TDLVMKGIKH GACDYLIKPV RMEELKNIWQ HVVRKKFGGS KEHEHSGSLD DTDRNRLTNN DNEYASSAND GAEDSWKSQK KKRDKEEDDS ELESGDPSNN
201: SKKPRVVWSV ELHQQFVNAV NHLGIDKAVP KKILELMNVP GLTRENVASH LQKFRLYLKR IAQHHAGMAN PYSVPASSAQ VASLGGLDFQ ALAASGQIPP
301: QALAALQDEL LGRPTNSLVL PGRDQSSLRL AAVKGNKPHG EQIAFGQPIY KVQNNSYAAL PQNSSAVGRM PSFSAWPNNK LGMSDSMSAL GHVNNSQNSN
401: MVLHELQQQP DTMLSGTLHT LDVKPSGIVM PSQSLNTFPA SEGLSPNQNS LIIPSQSSGF LTGIPPSMKP ELVLPTSQSS NSLLGGIDLI NQASTSQPFI
501: SSHGGNLPGL MNRNSNVMPS QGISSFQTGN TPYLVNQNSM GMGSKPPGVL KTESTDSLNQ NYAYANHMDS GLLSSQSKNA QFGFLQSPND ITGGWSSLQN
601: MDGYRNTVGP SQPVSSSSSF QSSNAALGKL PDQGRGKNLG FVGKGTCIPN RFAVDEIESP TNSLSHSIGS SGDIPDMFGF SGQM

Best Arabidopsis Sequence Match ( AT3G16857.1 )
(BLAST)

001: MMNPSHGRGL GSAGGSSSGR NQGGGGETVV EMFPSGLRVL VVDDDPTCLM ILERMLRTCL YEVTKCNRAE MALSLLRKNK HGFDIVISDV HMPDMDGFKL
101: LEHVGLEMDL PVIMMSADDS KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE ETGERQQQQH RGGGGGAAVS GGEDAVDDNS
201: SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL MNVPGLTREN VASHLQKYRI YLRRLGGVSQ
301: HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN
401: LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS NRISERSGFS GRNNIPESSR VLPTSYTNLT
501: TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN IGIAFDSHQD SESAAFSASE AYSSSSMSRH
601: NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQV

Arabidopsis Description

ARR1Two-component response regulator ARR1 [Source:UniProtKB/Swiss-Prot;Acc:Q940D0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.