CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048046_P001	Maize	nucleus	93.0	93.0
Zm00001d028265_P002	Maize	nucleus	93.29	91.43
Os03t0224200-01	Rice	nucleus	81.78	81.19
TraesCS4B01G240100.1	Wheat	nucleus	79.3	79.53
HORVU4Hr1G066480.1	Barley	nucleus	79.15	79.39
TraesCS4A01G063100.1	Wheat	nucleus	78.72	78.95
TraesCS4D01G239900.1	Wheat	nucleus	78.57	78.8
GSMUA_Achr1P22230_001	Banana	nucleus	52.77	50.07
CDY64566	Canola	nucleus	27.41	50.0
Bra026635.1-P	Field mustard	nucleus	27.26	49.6
CDY09419	Canola	nucleus	27.26	49.6
GSMUA_Achr8P30850_001	Banana	nucleus	50.44	48.06
AT2G01760.2	Thale cress	nucleus	28.28	47.32
CDY68249	Canola	nucleus	27.26	42.79
VIT_01s0011g05830.t01	Wine grape	nucleus	43.59	42.78
KRH70359	Soybean	nucleus	38.78	42.02
KRH49669	Soybean	nucleus	37.61	40.76
KXG20365	Sorghum	cytosol	6.41	40.74
PGSC0003DMT400075907	Potato	nucleus	38.48	40.43
Solyc04g008050.2.1	Tomato	nucleus	38.34	40.21
KXG38401	Sorghum	nucleus	16.18	31.99
EES04061	Sorghum	nucleus	24.93	29.53
EES07684	Sorghum	nucleus	28.57	29.04
EES06387	Sorghum	nucleus	26.38	28.68
KXG19480	Sorghum	nucleus	27.41	27.98
OQU78916	Sorghum	nucleus	21.14	26.32
KXG20364	Sorghum	nucleus	21.72	22.31
EES09342	Sorghum	nucleus	22.3	22.05
OQU76785	Sorghum	nucleus	17.35	21.96
KXG33682	Sorghum	mitochondrion, nucleus	8.6	21.53
KXG20361	Sorghum	nucleus	20.85	21.31
EER90120	Sorghum	nucleus	13.99	17.61

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	EntrezGene:8056866	UniProt:C5WSM4
InterPro:CheY-like_superfamily	ProteinID:EER95243.1	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930
InterPro:Myb_dom	InterPro:Myb_dom_plants	EnsemblPlants:OQU92974	ProteinID:OQU92974	ProteinID:OQU92974.1	PFAM:PF00072
PFAM:PF00249	PIRSF:PIRSF036392	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF32
InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb	SMART:SM00448	EnsemblPlantsGene:SORBI_3001G451000	SUPFAM:SSF46689	SUPFAM:SSF52172
unigene:Sbi.12399	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI0001A8337C	RefSeq:XP_002468245.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:72773813..72781898

Molecular Weight (calculated)

73684.0 Da

IEP (calculated)

6.734

GRAVY (calculated)

-0.423

Length

686 amino acids

Sequence
(BLAST)

001: MAAAEARGGE FPVGMKVLVV DDDPTCLLVL KRMLLDCRYD VTTCPQATRA LTMLRENRRG FDVIISDVHM PDMDGFRLLE LVGLEMDLPV IMMSADSRTD
101: IVMKGIKHGA CDYLIKPVRM EELKNIWQHV VRKKFNENKD HEHSGSLDDT DRNRPTNNDN EYASSANDGG DGSWKSQKKK REKEDDETDL ENGDPSSTSK
201: KPRVVWSVEL HQQFVNAVNH LGIDKAVPKK ILELMNVPGL TRENVASHLQ KFRLYLKRIA QHHAGIPHPF VAPASSAKVA PLGGLEFQAL AASGQIPPQA
301: LAALQDELLG RPTSSLALPG RDQSSLRLAA IKGNKSHGER EIAFGQPIYK CQNNAYGAFP QSSPSVGGLP SFAAWPNNKL GMTDSPSTLG NVGSSQNNNM
401: LLHELQQQPD TLLSGTLHNI DVKPSGVVMP SQSLNAFPAS EGISPNQNPL ILPSQSSSFL ASIPPSMKHE PLLGSPSPST SLLGGLDMVN QASTSQPLIS
501: SHGANLPGLI NRSTNAMPSP GINNFQSGNI PYLVNQNAMG VSSRPPGVLK TESTDSLSRS YGYIGGSTSV DSVLLSSQSK NAQYGLLQSQ NDVSGSWSPS
601: QDFDSFGNSL GQGHPGSTSS NFQSSALGKL PDQGRGRNHG FVGKGTCIPS RFAVDEVESP TNNLSHSIGN SGDIVNPDIF GFSGQM

Best Arabidopsis Sequence Match ( AT3G16857.1 )
(BLAST)

001: MMNPSHGRGL GSAGGSSSGR NQGGGGETVV EMFPSGLRVL VVDDDPTCLM ILERMLRTCL YEVTKCNRAE MALSLLRKNK HGFDIVISDV HMPDMDGFKL
101: LEHVGLEMDL PVIMMSADDS KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE ETGERQQQQH RGGGGGAAVS GGEDAVDDNS
201: SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL MNVPGLTREN VASHLQKYRI YLRRLGGVSQ
301: HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN
401: LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS NRISERSGFS GRNNIPESSR VLPTSYTNLT
501: TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN IGIAFDSHQD SESAAFSASE AYSSSSMSRH
601: NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQV

Arabidopsis Description

ARR1Two-component response regulator ARR1 [Source:UniProtKB/Swiss-Prot;Acc:Q940D0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.