CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012128_P001	Maize	nucleus	90.33	86.73
Zm00001d042463_P001	Maize	nucleus	91.54	86.18
Os01t0904700-01	Rice	nucleus	78.41	78.01
TraesCS3B01G423600.1	Wheat	nucleus	76.68	76.03
TraesCS3A01G391600.1	Wheat	nucleus	76.51	75.86
TraesCS3D01G384500.2	Wheat	nucleus	77.03	71.59
GSMUA_Achr3P14630_001	Banana	cytosol	41.28	65.48
GSMUA_Achr8P32070_001	Banana	nucleus	46.63	49.54
KRG97483	Soybean	nucleus	38.86	49.45
CDX96070	Canola	nucleus	40.07	45.22
CDY01838	Canola	nucleus	39.03	45.2
Bra004245.1-P	Field mustard	nucleus	39.38	44.53
Bra004076.1-P	Field mustard	nucleus	38.86	44.2
CDY07410	Canola	nucleus	38.86	44.2
VIT_01s0010g02230.t01	Wine grape	nucleus	44.73	43.6
CDY28869	Canola	nucleus	38.17	43.59
AT1G67710.1	Thale cress	nucleus	39.03	43.38
VIT_17s0000g10100.t01	Wine grape	nucleus	42.31	42.98
KXG20365	Sorghum	cytosol	7.77	41.67
KRH31403	Soybean	nucleus	43.01	41.23
KRH58726	Soybean	endoplasmic reticulum, extracellular	43.7	39.84
KRH42619	Soybean	nucleus	35.06	39.8
PGSC0003DMT400031260	Potato	nucleus	39.55	39.48
Solyc05g014260.2.1	Tomato	nucleus	39.55	39.41
VIT_17s0000g10110.t01	Wine grape	nucleus	30.57	39.16
KXG38401	Sorghum	nucleus	17.62	29.39
OQU78916	Sorghum	nucleus	25.91	27.22
EES06387	Sorghum	nucleus	29.53	27.1
OQU92974	Sorghum	nucleus	29.53	24.93
KXG19480	Sorghum	nucleus	28.67	24.7
EES07684	Sorghum	nucleus	28.5	24.44
KXG20364	Sorghum	nucleus	25.73	22.31
EES09342	Sorghum	nucleus	26.42	22.05
KXG20361	Sorghum	nucleus	25.22	21.76
OQU76785	Sorghum	nucleus	18.83	20.11
KXG33682	Sorghum	mitochondrion, nucleus	8.81	18.61
EER90120	Sorghum	nucleus	14.68	15.6

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	EntrezGene:8056131	UniProt:C5XFH1
InterPro:CheY-like_superfamily	EnsemblPlants:EES04061	ProteinID:EES04061	ProteinID:EES04061.1	GO:GO:0000160	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009719	GO:GO:0009735	GO:GO:0009987	GO:GO:0010082	GO:GO:0040007	InterPro:Homeobox-like_sf
InterPro:IPR001789	InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249	PIRSF:PIRSF036392	PFscan:PS50110
PANTHER:PTHR31442	PANTHER:PTHR31442:SF17	InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb	SMART:SM00448	EnsemblPlantsGene:SORBI_3003G393300
SUPFAM:SSF46689	SUPFAM:SSF52172	unigene:Sbi.2563	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI0001A854C1
RefSeq:XP_002458941.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:70434358..70438736

Molecular Weight (calculated)

64703.8 Da

IEP (calculated)

4.844

GRAVY (calculated)

-0.424

Length

579 amino acids

Sequence
(BLAST)

001: MALTDATAFP YGLRVLVVDD DPTWLKILEK MLRKCSYEVT TCGLASVALQ ILRERRNKFD IVISDVNMPD MDGFKLLELI GLEMDLPVIM MSIDGETSRV
101: MKGVQHGACD YLLKPVRMKE LRNIWQHVYR KKMHEVKEIE GNDSCDDLQI FRNGVEGFDE RGLFMRADSD TMRKRKDMDK DHADQDSSDG ATVKKARVVW
201: SVDLHQKFVN AVNQIGFDKV GPKKILDLMS VPGLTRENVA SHLQKYRLYL SRLQKQNEER IMGAARQDFS HKGPSDNLNL RSSFEEQPGN LSNGFQHSSQ
301: KIQAQTNIPD PHLDDTKTSV PLKVPDKNGT SVSDAVDPQN ITSASPLSGV FSFERMPVNQ DRKLSETMIL ECQSWSGSVP PKQFMQYPKH NHERCDLLGD
401: YSCLPKPDLE HPIAPGHLYA PAPVISMVEG DARNFSDVKP DLIACMKSLS PALTCTVESV SAQLSDSAVT STNSDQKFSS VEGLSSIKDC DFDQERNQAT
501: LLTSEEASII CGTDLTWLHD DLSGYQGVSF SNIGLNSIDL FQCNDTMGAL PGLQNNWYDD IELSSETMEI QLLDGGLFA

Best Arabidopsis Sequence Match ( AT1G67710.1 )
(BLAST)

001: MEKSGFSPVG LRVLVVDDDP TWLKILEKML KKCSYEVTTC GLAREALRLL RERKDGYDIV ISDVNMPDMD GFKLLEHVGL ELDLPVIMMS VDGETSRVMK
101: GVQHGACDYL LKPIRMKELK IIWQHVLRKK LQEVRDIEGC GYEGGADWIT RYDEAHFLGG GEDVSFGKKR KDFDFEKKLL QDESDPSSSS SKKARVVWSF
201: ELHHKFVNAV NQIGCDHKAG PKKILDLMNV PWLTRENVAS HLQKYRLYLS RLEKGKELKC YSGGVKNADS SPKDVEVNSG YQSPGRSSYV FSGGNSLIQK
301: ATEIDPKPLA SASLSDLNTD VIMPPKTKKT RIGFDPPISS SAFDSLLPWN DVPEVLESKP VLYENSFLQQ QPLPSQSSYV ANSAPSLMEE EMKPPYETPA
401: GGSSVNADEF LMPQDKIPTV TLQDLDPSAM KLQEFNTEAI LRSLNWELPE SHHSVSLDTD LDLTWLQGER FLANTGLQFQ DYSSSPSLLS ELPAHLNWYG
501: NERLPDPDEY SFMVDQGLFI S

Arabidopsis Description

ARR11Two-component response regulator [Source:UniProtKB/TrEMBL;Acc:Q0WRT0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.