CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018380_P001	Maize	nucleus	80.44	88.15
Os02t0796500-01	Rice	nucleus	71.11	69.77
GSMUA_AchrUn_...	Banana	nucleus	27.11	68.8
TraesCS6D01G342200.1	Wheat	nucleus	66.81	66.81
TraesCS6A01G359200.1	Wheat	nucleus	66.67	66.57
TraesCS6B01G392000.1	Wheat	nucleus	66.07	66.17
HORVU6Hr1G085560.5	Barley	nucleus	64.44	63.5
KXG19480	Sorghum	nucleus	58.81	59.08
KXG20365	Sorghum	cytosol	7.26	45.37
EES06387	Sorghum	nucleus	36.89	39.46
Solyc07g005140.2.1	Tomato	nucleus	36.59	37.14
PGSC0003DMT400020233	Potato	nucleus	37.04	35.36
Solyc12g010330.1.1	Tomato	nucleus	36.59	34.89
KXG38401	Sorghum	nucleus	16.74	32.56
PGSC0003DMT400008290	Potato	nucleus	36.74	32.08
OQU78916	Sorghum	nucleus	24.89	30.49
OQU92974	Sorghum	nucleus	29.04	28.57
EES04061	Sorghum	nucleus	24.44	28.5
EES09342	Sorghum	nucleus	26.07	25.36
KXG20364	Sorghum	nucleus	24.74	25.0
KXG20361	Sorghum	nucleus	24.59	24.74
OQU76785	Sorghum	nucleus	18.22	22.69
KXG33682	Sorghum	mitochondrion, nucleus	8.3	20.44
EER90120	Sorghum	nucleus	14.52	17.98

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	EntrezGene:8084640	UniProt:C5XUH1
InterPro:CheY-like_superfamily	EnsemblPlants:EES07684	ProteinID:EES07684	ProteinID:EES07684.1	GO:GO:0000160	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR001789	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249
PIRSF:PIRSF036392	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF15	InterPro:Response_reg_B-typ_pln
InterPro:SANT/Myb	SMART:SM00448	EnsemblPlantsGene:SORBI_3004G330900	SUPFAM:SSF46689	SUPFAM:SSF52172	unigene:Sbi.6370
InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI0001A862AD	RefSeq:XP_002454708.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:66411112..66415897

Molecular Weight (calculated)

73140.4 Da

IEP (calculated)

6.349

GRAVY (calculated)

-0.341

Length

675 amino acids

Sequence
(BLAST)

001: MRPEERNAAV GRVRDQFPVG MRVLAVDDDP VCLKVLENLL RRCQYRVTTT NQAVVALRML RQNRDLFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS
101: VNGETKTVMK GITHGACDYL LKPVRLEELR NIWQHVVRRK FSNCERANID GYEECTRPSN ADFDHVHSQI TGGTPDQSGR SSKKRKEYHS EEEDEGEESN
201: GQENDDPSAP KKPRVVWSVE LHRKFVAAVN QLGIDKAVPK RILELMNVER LTRENVASHL QKYRLYLKRL SAVASQQASI VAAFGGNDPF MRMGAFEGLQ
301: GYQSFASSAA LPSFTPQGLL NRNSPTSFAL QGMSASRPIQ IASNSTISHS ISDPNKYHLS LPGTSSRQGN LAQGLTTSVG QVQLPQKWIH EETDDLSTIL
401: SVSGQANNGV PGTLQSVTNS HLLQQGLVEC RQDKVVIQPC SSASSDRLEG TVGVSSSLMD SCASQQNVVP LSAFSISASP MNGSLCSNGV AELGATSSVG
501: TNICPSNDLR VARDNNVGAS SFGSVILLSP DTVPNQKYLN FGGGSNLRQS MDGGNTDNLL NSKLIWSCLP TSQPSNLVGS HHPMSQRLNN GNLGGTMVGQ
601: TTAAAPQTRI DMFTSGDTPT PKSASDLSFP KVHSELSSSS CSFDGLLNSI IKVEKDDASF SDDLGCDFYS LGACI

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.