Factsheet for TraesCS6D01G342200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G359200.1	Wheat	nucleus	99.26	99.11
TraesCS6B01G392000.1	Wheat	nucleus	97.33	97.48
HORVU6Hr1G085560.5	Barley	nucleus	90.22	88.91
Os02t0796500-01	Rice	nucleus	75.41	73.98
GSMUA_AchrUn_...	Banana	nucleus	26.67	67.67
EES07684	Sorghum	nucleus	66.81	66.81
Zm00001d018380_P001	Maize	nucleus	58.37	63.96
TraesCS7D01G148200.1	Wheat	nucleus	56.15	57.51
TraesCS7D01G148000.1	Wheat	nucleus	50.22	56.41
TraesCS7D01G499700.1	Wheat	cytosol	8.89	56.07
Solyc07g005140.2.1	Tomato	nucleus	37.78	38.35
TraesCS6D01G135500.3	Wheat	nucleus	34.96	36.59
PGSC0003DMT400020233	Potato	nucleus	37.78	36.07
Solyc12g010330.1.1	Tomato	nucleus	37.33	35.59
PGSC0003DMT400008290	Potato	nucleus	38.07	33.25
TraesCS7D01G489600.1	Wheat	nucleus	22.67	30.48
TraesCS7D01G499600.1	Wheat	nucleus	22.07	30.04
TraesCS7D01G525900.1	Wheat	nucleus	24.3	28.32
TraesCS4D01G239900.1	Wheat	nucleus	28.3	27.92
TraesCS7D01G500600.1	Wheat	nucleus	22.67	26.8
TraesCS3D01G355500.1	Wheat	nucleus, plastid	8.89	26.43
TraesCS3D01G384500.2	Wheat	nucleus	23.11	25.04
TraesCS1D01G257700.1	Wheat	nucleus	10.81	23.62
TraesCS3D01G531900.1	Wheat	nucleus	9.19	22.06

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR001789
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249	PIRSF:PIRSF036392
PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF15	InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb
SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	EnsemblPlantsGene:TraesCS6D01G342200
EnsemblPlants:TraesCS6D01G342200.1	TIGR:cd00156	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:-:441619684..441623274

Molecular Weight (calculated)

72677.7 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.322

Length

675 amino acids

Sequence
(BLAST)

001: MRTDVRRGAA ATGMDQFPVG MRVLAVDDDP VCLKVLETLL RRCQYHVTAT NQAVIALRML RENRDMFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS
101: VNGETKTVMK GITHGACDYL LKPVRIEELR NIWQHVVRRK FSTRDSVNLD TYEECNKPPS ADSDYVFGQV TCGSPDQSGR PSKKRKEYHS EEEDEDEDSS
201: GQDNDDPSAP KRPRVVWSVE LHRKFVAAVN HLGIDKAVPK RILELMNVEK LTRENVASHL QKYRLYLRRL SAVASQQAGI VAALGGRDPF LRMDAFEGLQ
301: GYQAFTSPAA LSTFSAHGLL NSPRNNQTAV VIQGVATSRS IPTGSSSCTT NPLIGDAAKY HLSLPGNQHG NLGQGLATSL GQAQLQQKWM NEGSGDLSTI
401: LSGNSRANGM PRMLPSVTSS PLLPPDLVEC TQAKVAIQPS VRAPSASVEL LEGAIGASSG PLESRVSQQS ALPSSGFSAN MLPVHGSFNN NGASFSSNGA
501: TRLGDAFSAS FRPTNDLTVA RGTKVGAGSF GGTIHLSPDT EQKYLSFGSS DSLLDPKLVW SSSQLPSNIG AHYHSMSQRS NNCSIDSSHG GRMFGQTSAS
601: ASTAAPQTKF DILFSGDTSM ARNASESGPQ RLQSELSSST CSFDGLLNSM IKVEKDDAAF GDDLGCDFYS LGACI

Best Arabidopsis Sequence Match ( AT4G31920.1 )
(BLAST)

001: MTMEQEIEVL DQFPVGMRVL AVDDDQTCLR ILQTLLQRCQ YHVTTTNQAQ TALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVKH GACDYLLKPV RIEELKNIWQ HVVRKSKLKK NKSNVSNGSG NCDKANRKRK EQYEEEEEEE RGNDNDDPTA QKKPRVLWTH ELHNKFLAAV
201: DHLGVERAVP KKILDLMNVD KLTRENVASH LQKFRVALKK VSDDAIQQAN RAAIDSHFMQ MNSQKGLGGF YHHHRGIPVG SGQFHGGTTM MRHYSSNRNL
301: GRLNSLGAGM FQPVSSSFPR NHNDGGNILQ GLPLEELQIN NNINRAFPSF TSQQNSPMVA PSNLLLLEGN PQSSSLPSNP GFSPHFEISK RLEHWSNAAL
401: STNIPQSDVH SKPDTLEWNA FCDSASPLVN PNLDTNPASL CRNTGFGSTN AAQTDFFYPL QMNQQPANNS GPVTEAQLFR SSNPNEGLLM GQQKLQSGLM
501: ASDAGSLDDI VNSLMTQEQS QSDFSEGDWD LDGLAHSEHA YEKLHFPFSL SA

Arabidopsis Description

ARR10Two-component response regulator ARR10 [Source:UniProtKB/Swiss-Prot;Acc:O49397]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.