Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g010330.1.1 | Tomato | nucleus | 96.32 | 96.19 |
| PGSC0003DMT400008290 | Potato | nucleus | 69.31 | 63.39 |
| TraesCS7B01G408600.1 | Wheat | cytosol | 12.16 | 63.24 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.48 | 62.41 |
| TraesCS7D01G499700.1 | Wheat | cytosol | 8.91 | 58.88 |
| TraesCS7A01G510400.1 | Wheat | cytosol | 6.93 | 58.33 |
| VIT_11s0206g00060.t01 | Wine grape | nucleus | 56.86 | 58.01 |
| TraesCS7A01G539700.1 | Wheat | cytosol, nucleus, plastid | 9.05 | 57.66 |
| TraesCS7B01G421000.1 | Wheat | cytosol | 8.35 | 55.14 |
| KRH16193 | Soybean | nucleus | 15.7 | 54.95 |
| Zm00001d036803_P001 | Maize | cytosol | 8.06 | 53.77 |
| TraesCS7B01G420800.1 | Wheat | cytosol | 7.92 | 52.34 |
| KRH37916 | Soybean | nucleus | 51.34 | 52.01 |
| KRH12938 | Soybean | nucleus | 51.49 | 51.93 |
| KRH33116 | Soybean | cytosol | 19.94 | 49.47 |
| HORVU7Hr1G112860.2 | Barley | cytosol | 14.0 | 47.14 |
| CDX87845 | Canola | cytosol, extracellular | 8.91 | 47.01 |
| VIT_04s0008g05900.t01 | Wine grape | nucleus | 45.54 | 46.46 |
| CDY13465 | Canola | nucleus | 33.95 | 46.33 |
| Bra023972.1-P | Field mustard | nucleus | 33.8 | 46.14 |
| CDX72337 | Canola | nucleus | 34.09 | 46.08 |
| KRH03086 | Soybean | nucleus | 43.42 | 45.08 |
| KXG20365 | Sorghum | cytosol | 6.79 | 44.44 |
| KRH61694 | Soybean | nucleus | 40.31 | 43.45 |
| CDY35371 | Canola | nucleus | 35.5 | 43.2 |
| KRH20086 | Soybean | nucleus | 41.44 | 43.09 |
| Bra032035.1-P | Field mustard | nucleus | 35.36 | 43.03 |
| CDY70103 | Canola | nucleus | 35.08 | 42.98 |
| AT4G31920.1 | Thale cress | nucleus | 33.52 | 42.93 |
| GSMUA_Achr10P... | Banana | nucleus | 39.46 | 42.73 |
| CDX68803 | Canola | nucleus | 30.69 | 42.47 |
| KRH05273 | Soybean | nucleus | 40.03 | 42.43 |
| KRH15779 | Soybean | nucleus | 39.89 | 41.96 |
| AT2G25180.1 | Thale cress | nucleus | 35.22 | 41.78 |
| GSMUA_Achr11P... | Banana | nucleus | 37.2 | 41.61 |
| KRH52361 | Soybean | nucleus | 40.88 | 41.52 |
| GSMUA_Achr2P05130_001 | Banana | nucleus | 37.62 | 41.3 |
| Os02t0182100-01 | Rice | nucleus | 36.21 | 40.89 |
| TraesCS6B01G174400.1 | Wheat | nucleus | 35.36 | 40.19 |
| HORVU6Hr1G028680.1 | Barley | nucleus | 35.22 | 39.97 |
| EES06387 | Sorghum | nucleus | 35.36 | 39.62 |
| Zm00001d015521_P001 | Maize | nucleus | 34.79 | 38.99 |
| HORVU7Hr1G112830.1 | Barley | cytosol, nucleus | 9.34 | 38.82 |
| TraesCS6A01G146200.3 | Wheat | nucleus | 35.08 | 38.75 |
| GSMUA_Achr3P13400_001 | Banana | nucleus | 34.23 | 38.53 |
| TraesCS6D01G135500.3 | Wheat | nucleus | 35.08 | 38.45 |
| TraesCS7D01G148000.1 | Wheat | nucleus | 32.39 | 38.1 |
| TraesCS6B01G392000.1 | Wheat | nucleus | 36.07 | 37.83 |
| Os02t0796500-01 | Rice | nucleus | 36.78 | 37.79 |
| TraesCS6D01G342200.1 | Wheat | nucleus | 36.07 | 37.78 |
| TraesCS6A01G359200.1 | Wheat | nucleus | 36.07 | 37.72 |
| Zm00001d045112_P001 | Maize | nucleus | 35.64 | 37.67 |
| KXG19480 | Sorghum | nucleus | 35.36 | 37.2 |
| TraesCS7B01G049200.1 | Wheat | nucleus | 34.51 | 37.14 |
| EES07684 | Sorghum | nucleus | 35.36 | 37.04 |
| TraesCS7A01G146500.1 | Wheat | nucleus | 31.68 | 37.02 |
| Os06t0183100-01 | Rice | nucleus | 36.35 | 36.93 |
| TraesCS7B01G049000.1 | Wheat | nucleus | 32.53 | 36.86 |
| HORVU7Hr1G030050.1 | Barley | nucleus | 32.53 | 36.74 |
| TraesCS7A01G146700.1 | Wheat | nucleus | 34.23 | 36.72 |
| TraesCS7D01G148200.1 | Wheat | nucleus | 34.23 | 36.72 |
| TraesCS7A01G146400.1 | Wheat | nucleus | 31.82 | 36.65 |
| HORVU6Hr1G085560.5 | Barley | nucleus | 35.36 | 36.5 |
| GSMUA_Achr10P... | Banana | nucleus | 21.78 | 35.48 |
| Zm00001d018380_P001 | Maize | nucleus | 30.13 | 34.58 |
| PGSC0003DMT400060506 | Potato | nucleus | 31.97 | 34.09 |
| HORVU7Hr1G114130.2 | Barley | nucleus | 23.48 | 33.88 |
| TraesCS7D01G489600.1 | Wheat | nucleus | 24.05 | 33.86 |
| CDY02794 | Canola | nucleus | 22.35 | 33.12 |
| TraesCS7A01G510300.1 | Wheat | nucleus | 23.34 | 33.07 |
| TraesCS7D01G525900.1 | Wheat | nucleus | 27.02 | 32.99 |
| TraesCS7D01G499600.1 | Wheat | nucleus | 23.06 | 32.86 |
| PGSC0003DMT400065835 | Potato | nucleus | 31.26 | 32.74 |
| OQU78916 | Sorghum | nucleus | 25.18 | 32.3 |
| HORVU7Hr1G030000.4 | Barley | nucleus | 33.8 | 32.17 |
| TraesCS7B01G420900.1 | Wheat | nucleus | 22.21 | 31.72 |
| TraesCS3B01G517000.1 | Wheat | nucleus | 25.6 | 31.7 |
| TraesCS7B01G422000.1 | Wheat | nucleus | 24.89 | 31.26 |
| HORVU7Hr1G114450.2 | Barley | nucleus | 26.17 | 31.09 |
| TraesCS3A01G473600.1 | Wheat | nucleus | 24.89 | 30.82 |
| TraesCSU01G040900.1 | Wheat | nucleus | 24.61 | 30.47 |
| HORVU7Hr1G118290.2 | Barley | nucleus | 25.88 | 30.35 |
| TraesCS7A01G511300.1 | Wheat | nucleus | 24.47 | 30.3 |
| TraesCS7D01G500600.1 | Wheat | nucleus | 24.47 | 30.3 |
| TraesCS7A01G502300.1 | Wheat | nucleus | 24.19 | 30.16 |
| PGSC0003DMT400090747 | Potato | nucleus | 23.62 | 29.87 |
| PGSC0003DMT400075907 | Potato | nucleus | 27.58 | 29.86 |
| PGSC0003DMT400031260 | Potato | nucleus | 24.47 | 29.83 |
| TraesCS7A01G511100.1 | Wheat | nucleus | 24.05 | 29.77 |
| TraesCS7B01G422100.1 | Wheat | nucleus | 23.9 | 29.6 |
| TraesCS7B01G408700.1 | Wheat | nucleus | 26.03 | 29.21 |
| Zm00001d036802_P001 | Maize | nucleus | 15.84 | 28.87 |
| PGSC0003DMT400035788 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 8.77 | 28.57 |
| AT5G58080.1 | Thale cress | nucleus | 25.46 | 28.35 |
| Zm00001d046755_P001 | Maize | nucleus | 26.73 | 28.17 |
| CDY02793 | Canola | nucleus | 24.89 | 28.11 |
| Bra020390.1-P | Field mustard | nucleus | 24.61 | 27.93 |
| CDY32725 | Canola | nucleus | 24.61 | 27.93 |
| KXG20361 | Sorghum | nucleus | 26.03 | 27.42 |
| CDY49965 | Canola | mitochondrion | 13.01 | 27.3 |
| KXG20364 | Sorghum | nucleus | 25.74 | 27.25 |
| HORVU7Hr1G112890.1 | Barley | nucleus | 25.6 | 26.81 |
| TraesCS3A01G473800.1 | Wheat | nucleus | 21.36 | 26.77 |
| TraesCSU01G105200.1 | Wheat | nucleus | 19.38 | 26.35 |
| HORVU7Hr1G112840.1 | Barley | nucleus | 24.33 | 26.34 |
| Os06t0647200-02 | Rice | nucleus | 25.6 | 26.23 |
| EES09342 | Sorghum | nucleus | 25.74 | 26.22 |
| PGSC0003DMT400072213 | Potato | nucleus | 9.76 | 25.94 |
| OQU76785 | Sorghum | nucleus | 18.95 | 24.72 |
| PGSC0003DMT400005490 | Potato | nucleus | 10.47 | 24.5 |
| PGSC0003DMT400018485 | Potato | nucleus | 10.04 | 24.48 |
| PGSC0003DMT400077979 | Potato | nucleus | 10.75 | 24.2 |
| PGSC0003DMT400089008 | Potato | nucleus | 17.26 | 20.93 |
| EER90120 | Sorghum | nucleus | 14.57 | 18.9 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102587717 | MapMan:11.4.2.4 | MapMan:15.5.23 | Gene3D:3.40.50.2300 | InterPro:CheY-like_superfamily |
| ncoils:Coil | GO:GO:0000160 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR001789 | InterPro:IPR017930 | UniProt:M1AD55 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00072 | PFAM:PF00249 | EnsemblPlantsGene:PGSC0003DMG400007823 | PGSC:PGSC0003DMG400007823 |
| EnsemblPlants:PGSC0003DMT400020233 | PIRSF:PIRSF036392 | PFscan:PS50110 | PFscan:PS51294 | PANTHER:PTHR43874 | PANTHER:PTHR43874:SF8 |
| InterPro:Response_reg_B-typ_pln | InterPro:SANT/Myb | SMART:SM00448 | SUPFAM:SSF46689 | SUPFAM:SSF52172 | InterPro:Sig_transdc_resp-reg_receiver |
| TIGRFAMs:TIGR01557 | UniParc:UPI000296B5A8 | RefSeq:XP_006350077.1 | SEG:seg | : | : |
Description
Two-component system sensor histidine kinase/response regulator [Source:PGSC_GENE;Acc:PGSC0003DMG400007823]
Coordinates
chr12:+:2022942..2028991
Molecular Weight (calculated)
77576.1 Da
IEP (calculated)
6.387
GRAVY (calculated)
-0.618
Length
707 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVEEIRGNM GGERENYDNF PVGMKVLAVD DDPICLKLLD GLLRKCQYHV TTTSQARTAL KMLRENKDRF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI
101: MLSANSDSKL VMKGITHGAC DYLVKPVRLE ELKNIWQHVI RRKKVEPKKQ NKSDDQDKAH QGGGEGERGS QLSGNADQNG KVNKKRKDEE YESDENGNDD
201: EDPGTQKKPR VVWAIELHKK FVTAVHQLGL EKAVPKRILD LMNVEGLTRE NVASHLQKYR LFLKRINAAD AQQANLAAAA LGGKDSAYMR MGSLDGLGGF
301: RTLAGAGRFG QASLSSSYAS GGMLGRLNSP SGVSLRNLAS SPMLQPNHGQ NLSNNSINAL MKFNANVPPA SQNANLFQGI PASLELDQLQ QSKCATHIRE
401: LNPLDESGLH TMASTFSNSR LVGSANSSMP NVSNNPILLQ VNSQQPLTGT GFGNQTSLNI ASFSSEAFNT GVSGSSNFLD HDRYNENWQT SLQPLKFQST
501: SFPLNEPFSN SHLPQDRVRD NDTSTGPLLQ NNPVDFSTSA IVSVPFESSR GETQCRESLG GAVQIMNQAT CQRWPDQNQH YSHNSNNIFG NMSSQVSSNG
601: GMASLTHPMD QNNDMFCTRV ETSLTGRSNG GSSMHIHNRE SEKLTHDSRT KTNEDYLFQT TKQQVGFLPQ GYGSLDDLMG EMKRDQDGAM LEGGEFGFDA
701: YSLGSGL
101: MLSANSDSKL VMKGITHGAC DYLVKPVRLE ELKNIWQHVI RRKKVEPKKQ NKSDDQDKAH QGGGEGERGS QLSGNADQNG KVNKKRKDEE YESDENGNDD
201: EDPGTQKKPR VVWAIELHKK FVTAVHQLGL EKAVPKRILD LMNVEGLTRE NVASHLQKYR LFLKRINAAD AQQANLAAAA LGGKDSAYMR MGSLDGLGGF
301: RTLAGAGRFG QASLSSSYAS GGMLGRLNSP SGVSLRNLAS SPMLQPNHGQ NLSNNSINAL MKFNANVPPA SQNANLFQGI PASLELDQLQ QSKCATHIRE
401: LNPLDESGLH TMASTFSNSR LVGSANSSMP NVSNNPILLQ VNSQQPLTGT GFGNQTSLNI ASFSSEAFNT GVSGSSNFLD HDRYNENWQT SLQPLKFQST
501: SFPLNEPFSN SHLPQDRVRD NDTSTGPLLQ NNPVDFSTSA IVSVPFESSR GETQCRESLG GAVQIMNQAT CQRWPDQNQH YSHNSNNIFG NMSSQVSSNG
601: GMASLTHPMD QNNDMFCTRV ETSLTGRSNG GSSMHIHNRE SEKLTHDSRT KTNEDYLFQT TKQQVGFLPQ GYGSLDDLMG EMKRDQDGAM LEGGEFGFDA
701: YSLGSGL
001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI
Arabidopsis Description
ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.