Factsheet for PGSC0003DMT400096763

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008290
PGSC0003DMT400020233
PGSC0003DMT400047665
PGSC0003DMT400067640

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11090.1	PGSC0003DMT400067640	AT4G24840.1	21798944
AT5G11090.1	PGSC0003DMT400008290	AT4G31920.1	18642946
AT5G11090.1	PGSC0003DMT400020233	AT4G31920.1	18642946
AT5G11090.1	PGSC0003DMT400047665	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	71.64	97.3
PGSC0003DMT400073335	Potato	plastid	64.18	68.25
PGSC0003DMT400020263	Potato	plastid	46.77	57.32
VIT_09s0002g08540.t01	Wine grape	plastid	56.22	56.22
KRH15826	Soybean	plastid	54.73	56.12
PGSC0003DMT400067139	Potato	plastid	55.22	54.41
PGSC0003DMT400078959	Potato	mitochondrion	55.22	53.88
KRH52394	Soybean	plastid	55.22	51.63
KRH05207	Soybean	plastid	52.24	51.47
CDX87091	Canola	plastid	48.26	49.49
CDX88167	Canola	plastid	45.27	49.46
CDX69786	Canola	mitochondrion, plastid	47.26	48.97
Bra028552.1-P	Field mustard	mitochondrion, plastid	46.27	48.95
CDX97080	Canola	mitochondrion, plastid	47.76	48.48
Bra036540.1-P	Field mustard	plastid	45.77	48.17
CDY19808	Canola	plastid	45.27	47.15
CDX70380	Canola	mitochondrion, plastid	51.74	47.06
PGSC0003DMT400079003	Potato	plastid	23.38	47.0
Bra008991.1-P	Field mustard	nucleus, plastid	50.75	46.58
CDX80497	Canola	plastid	47.26	46.12
Bra006088.1-P	Field mustard	plastid	49.75	46.08
Bra009829.1-P	Field mustard	plastid	47.26	45.89
AT5G25280.3	Thale cress	plastid	49.75	45.45
AT5G11090.1	Thale cress	plastid	48.76	45.16
CDX78410	Canola	mitochondrion, plastid	49.75	45.05
CDX85730	Canola	plastid	44.28	38.2
CDY51107	Canola	plastid	43.28	38.16
KRH61721	Soybean	plastid	50.25	37.83
GSMUA_Achr1P09980_001	Banana	plastid	31.34	28.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400096763	EnsemblPlantsGene:PGSC0003DMG400046334	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12	PGSC:PGSC0003DMG400046334	SEG:seg
UniParc:UPI0002956CE5	UniProt:M1DZ71	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400046334]

Coordinates

chr3:+:57055346..57055951

Molecular Weight (calculated)

22584.3 Da

IEP (calculated)

12.061

GRAVY (calculated)

-0.936

Length

201 amino acids

Sequence
(BLAST)

001: MEASSSRSKT HGSSFHHHFQ RSTSPSGRFC SYSMSSTSPS FSSFSNRDSD SDFMTRSTSP TRVNLRRSVS PSPNVRFSAS AGRSISVYPH QQKQTSRPLP
101: SNQKKTCMCS PTTHPGSFRC SFHKNMSQNR SHSNSSYRSS YHLNMRRSAM TNSLVRIGTV EGDLVKRALA ALIRPSSHQL RRRDDFQPRP SRLSVMSKAE
201: N

Best Arabidopsis Sequence Match ( AT5G11090.1 )
(BLAST)

001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN

Arabidopsis Description

At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.