Factsheet for VIT_09s0002g08540.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g01660.t01
VIT_17s0000g01560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11090.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944
AT5G11090.1	VIT_16s0098g01660.t01	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	46.77	63.51
VIT_04s0008g06250.t01	Wine grape	plastid	63.18	61.35
VIT_11s0118g00570.t01	Wine grape	plastid	59.2	59.2
PGSC0003DMT400073335	Potato	plastid	53.73	57.14
PGSC0003DMT400096763	Potato	plastid	56.22	56.22
KRH15826	Soybean	plastid	53.73	55.1
Solyc06g068330.1.1	Tomato	plastid	52.74	53.81
KRH52394	Soybean	plastid	56.22	52.56
KRH05207	Soybean	plastid	52.74	51.96
CDX87091	Canola	plastid	49.75	51.02
Bra036540.1-P	Field mustard	plastid	48.26	50.79
CDX88167	Canola	plastid	46.27	50.54
CDY19808	Canola	plastid	47.76	49.74
CDX69786	Canola	mitochondrion, plastid	47.26	48.97
Bra009829.1-P	Field mustard	plastid	50.25	48.79
CDX80497	Canola	plastid	49.75	48.54
Bra028552.1-P	Field mustard	mitochondrion, plastid	45.27	47.89
CDX97080	Canola	mitochondrion, plastid	46.77	47.47
AT5G25280.3	Thale cress	plastid	51.74	47.27
Bra006088.1-P	Field mustard	plastid	50.75	47.0
AT5G11090.1	Thale cress	plastid	50.75	47.0
Bra008991.1-P	Field mustard	nucleus, plastid	50.25	46.12
CDX78410	Canola	mitochondrion, plastid	50.75	45.95
CDX70380	Canola	mitochondrion, plastid	50.25	45.7
CDY51107	Canola	plastid	45.77	40.35
KRH61721	Soybean	plastid	53.23	40.07
CDX85730	Canola	plastid	44.78	38.63
VIT_11s0118g00580.t01	Wine grape	plastid	19.4	37.5
GSMUA_Achr1P09980_001	Banana	plastid	33.83	30.36

Protein Annotations

ArrayExpress:VIT_09s0002g08540	EMBL:FN596494	EnsemblPlants:VIT_09s0002g08540.t01	EnsemblPlantsGene:VIT_09s0002g08540	EntrezGene:100242170	EntrezGene:LOC100242170
PANTHER:PTHR33132	PANTHER:PTHR33132:SF12	ProteinID:CCB59687	ProteinID:CCB59687.1	RefSeq:XP_002271365	RefSeq:XP_002271365.1
SEG:seg	TIGR:TC52399	unigene:Vvi.2680	UniParc:UPI0002109FD7	UniProt:F6HXN0	wikigene:100242170
wikigene:LOC100242170	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr9:-:9605653..9606580

Molecular Weight (calculated)

21780.6 Da

IEP (calculated)

12.384

GRAVY (calculated)

-0.704

Length

201 amino acids

Sequence
(BLAST)

001: MANSSRSRSR GPNLQRSLSP SAGRFCSSSI SSTSAFYSRS SDFFKRSSSP TRVNLYRGVS SSPSPSVRFS IEPQTSPRRS ISVSPRDQVV RKQNTGSSRQ
101: KRTCLCSPTT HPGSFRCSMH KNANTGAGSG SGGAYQSNRL NARRSAMTNS LVRIGGVEGD LVKRALSALI RPSSHQQRRR AAFEPRLSRL SIMSMAGSDD
201: L

Best Arabidopsis Sequence Match ( AT5G11090.1 )
(BLAST)

001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN

Arabidopsis Description

At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.