CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03947
KRH53532
KRH57220
KRH64403

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11090.1	KRH03947	AT4G24840.1	21798944
AT5G11090.1	KRH57220	AT4G24840.1	21798944
AT5G11090.1	KRH53532	AT5G53060.1	21798944
AT5G11090.1	KRH64403	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15826	Soybean	plastid	75.0	78.06
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	44.12	60.81
KRH52394	Soybean	plastid	61.76	58.6
CDX88167	Canola	plastid	49.02	54.35
KRH37826	Soybean	mitochondrion, plastid	50.49	53.93
KRH12846	Soybean	mitochondrion	50.0	53.68
CDX87091	Canola	plastid	50.98	53.06
Bra036540.1-P	Field mustard	plastid	49.51	52.88
CDY19808	Canola	plastid	50.0	52.85
KRH09694	Soybean	plastid	41.67	52.8
VIT_09s0002g08540.t01	Wine grape	plastid	51.96	52.74
PGSC0003DMT400096763	Potato	plastid	51.47	52.24
PGSC0003DMT400073335	Potato	plastid	48.04	51.85
AT5G11090.1	Thale cress	plastid	54.9	51.61
KRH20230	Soybean	mitochondrion	51.47	51.47
Bra009829.1-P	Field mustard	plastid	51.96	51.21
Bra006088.1-P	Field mustard	plastid	54.41	51.15
CDX70380	Canola	mitochondrion, plastid	55.39	51.13
CDX69786	Canola	mitochondrion, plastid	48.53	51.03
KRH03579	Soybean	mitochondrion	50.0	51.0
CDX80497	Canola	plastid	51.47	50.97
Bra028552.1-P	Field mustard	mitochondrion, plastid	46.57	50.0
CDX97080	Canola	mitochondrion, plastid	48.53	50.0
CDX78410	Canola	mitochondrion, plastid	54.41	50.0
Solyc06g068330.1.1	Tomato	plastid	48.04	49.75
AT5G25280.3	Thale cress	plastid	53.43	49.55
Bra008991.1-P	Field mustard	nucleus, plastid	52.94	49.32
KRH61721	Soybean	plastid	56.86	43.45
CDY51107	Canola	plastid	46.08	41.23
CDX85730	Canola	plastid	45.1	39.48
KRH20233	Soybean	plastid	19.61	37.04
KRH03578	Soybean	nucleus, plastid	18.14	36.27
KRH37829	Soybean	plastid	18.63	29.92
GSMUA_Achr1P09980_001	Banana	plastid	32.84	29.91

Protein Annotations

EMBL:ACUP02010705	EnsemblPlants:KRH05207	EnsemblPlantsGene:GLYMA_17G213700	EntrezGene:100780557	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12
ProteinID:KRH05207	ProteinID:KRH05207.1	ProteinID:KRH05208.1	SEG:seg	UniParc:UPI000233DF5F	UniProt:K7MN51
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:35767502..35768989

Molecular Weight (calculated)

22501.4 Da

IEP (calculated)

12.054

GRAVY (calculated)

-0.745

Length

204 amino acids

Sequence
(BLAST)

001: MASSSRTKSS GPVLRSSSSS SSLSHSNSFC SYSTSNAPFH SPSSSFFRKP HSHVPPRSTS PTRVNLFSAA PLPSHSVRFA LDRSISPNRT VSSHVIAKHR
101: HVTAQKKSCM CSPTTHPGSF RCSLHKNSHS AQTGSFPSNR LNMRRSAMKN SLVRIGGVEG EWVKRALTAL IRPSSHQQRR RTAFEPRQSR LSIMSKADDE
201: EEEK

Best Arabidopsis Sequence Match ( AT5G25280.2 )
(BLAST)

001: MAITSSRTTR SNGSASLRSK SPSGRFCGVY SNRMPSSSPS SSGFASSTSS SFSSPSTAFF SSHNQNNHHQ HRSASPTRVN LFTSAPMTQS FRYSIDNRSI
101: SPNRSIAVSS NKPSNHHKIP DSRRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYTTNG LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHQLKR
201: RSAYEPRRSR LASMSKAEDL

Arabidopsis Description

AT5g25280/F18G18_20 [Source:UniProtKB/TrEMBL;Acc:Q93WB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.