CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03947
KRH53532
KRH57220
KRH64403

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11090.1	KRH03947	AT4G24840.1	21798944
AT5G11090.1	KRH57220	AT4G24840.1	21798944
AT5G11090.1	KRH53532	AT5G53060.1	21798944
AT5G11090.1	KRH64403	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61721	Soybean	plastid	86.98	70.04
KRH15826	Soybean	plastid	58.6	64.29
CDX88167	Canola	plastid	54.88	64.13
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	43.72	63.51
CDY19808	Canola	plastid	56.74	63.21
Bra006088.1-P	Field mustard	plastid	63.26	62.67
CDX97080	Canola	mitochondrion, plastid	57.21	62.12
KRH05207	Soybean	plastid	58.6	61.76
AT5G11090.1	Thale cress	plastid	62.33	61.75
Bra009829.1-P	Field mustard	plastid	59.07	61.35
CDX69786	Canola	mitochondrion, plastid	55.35	61.34
CDX78410	Canola	mitochondrion, plastid	63.26	61.26
Bra036540.1-P	Field mustard	plastid	54.42	61.26
Bra008991.1-P	Field mustard	nucleus, plastid	62.33	61.19
Bra028552.1-P	Field mustard	mitochondrion, plastid	53.95	61.05
CDX80497	Canola	plastid	58.14	60.68
AT5G25280.3	Thale cress	plastid	61.86	60.45
CDX70380	Canola	mitochondrion, plastid	61.4	59.73
KRH37826	Soybean	mitochondrion, plastid	52.56	59.16
CDX87091	Canola	plastid	53.02	58.16
PGSC0003DMT400073335	Potato	plastid	50.7	57.67
KRH20230	Soybean	mitochondrion	54.42	57.35
KRH12846	Soybean	mitochondrion	50.23	56.84
VIT_09s0002g08540.t01	Wine grape	plastid	52.56	56.22
Solyc06g068330.1.1	Tomato	plastid	51.16	55.84
KRH03579	Soybean	mitochondrion	51.63	55.5
PGSC0003DMT400096763	Potato	plastid	51.63	55.22
KRH09694	Soybean	plastid	39.07	52.17
CDX85730	Canola	plastid	52.56	48.5
CDY51107	Canola	plastid	51.16	48.25
KRH03578	Soybean	nucleus, plastid	18.6	39.22
KRH20233	Soybean	plastid	19.53	38.89
GSMUA_Achr1P09980_001	Banana	plastid	34.88	33.48
KRH37829	Soybean	plastid	17.67	29.92

Protein Annotations

EMBL:ACUP02003419	EnsemblPlants:KRH52394	EnsemblPlantsGene:GLYMA_06G065900	EntrezGene:100775494	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12
ProteinID:KRH52394	ProteinID:KRH52394.1	SEG:seg	UniParc:UPI0002339B88	UniProt:K7KTG2	MapMan:35.2

Description

hypothetical protein

Coordinates

chr6:+:5028393..5034377

Molecular Weight (calculated)

23461.6 Da

IEP (calculated)

12.282

GRAVY (calculated)

-0.689

Length

215 amino acids

Sequence
(BLAST)

001: MASSSSRTKS SGPVLRSLSP STRFCSYTTS KTPFSSPSSA FASSTSSGFS SSSFFNQPRQ HHAHSHHRAA SPTRVNLCSP APLSSAVRFS IDPRSISPNR
101: SISNQIITTK NNRPISGQKK TCMCSPTTHP GSFRCSLHKN IGSSNHNADS YPSNRLNMRR SAMKNSLVRI GGVEGEWVKR ALTALIRPSS HQQRRRAGFE
201: PRPSRLSVMS KAQDL

Best Arabidopsis Sequence Match ( AT5G11090.1 )
(BLAST)

001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN

Arabidopsis Description

At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.