Factsheet for Solyc03g117290.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g082980.2.1
Solyc07g005140.2.1
Solyc08g006660.1.1
Solyc12g010330.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11090.1	Solyc08g006660.1.1	AT4G24840.1	21798944
AT5G11090.1	Solyc07g005140.2.1	AT4G31920.1	18642946
AT5G11090.1	Solyc12g010330.1.1	AT4G31920.1	18642946
AT5G11090.1	Solyc03g082980.2.1	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400096763	Potato	plastid	97.3	71.64
Solyc06g065900.2.1	Tomato	plastid	39.19	62.37
Solyc06g068330.1.1	Tomato	plastid	75.68	56.85
Solyc12g009880.1.1	Tomato	plastid	57.43	51.83
KRH15826	Soybean	plastid	64.19	48.47
VIT_09s0002g08540.t01	Wine grape	plastid	63.51	46.77
Solyc07g007330.1.1	Tomato	mitochondrion	64.86	46.6
Bra028552.1-P	Field mustard	mitochondrion, plastid	58.11	45.26
KRH05207	Soybean	plastid	60.81	44.12
CDX87091	Canola	plastid	58.11	43.88
KRH52394	Soybean	plastid	63.51	43.72
Bra036540.1-P	Field mustard	plastid	56.08	43.46
CDY19808	Canola	plastid	55.41	42.49
CDX88167	Canola	plastid	52.7	42.39
CDX69786	Canola	mitochondrion, plastid	53.38	40.72
CDX97080	Canola	mitochondrion, plastid	54.05	40.4
Bra008991.1-P	Field mustard	nucleus, plastid	59.46	40.18
CDX80497	Canola	plastid	55.41	39.81
Bra006088.1-P	Field mustard	plastid	58.11	39.63
Bra009829.1-P	Field mustard	plastid	55.41	39.61
CDX70380	Canola	mitochondrion, plastid	58.11	38.91
CDX78410	Canola	mitochondrion, plastid	58.11	38.74
AT5G11090.1	Thale cress	plastid	56.76	38.71
AT5G25280.3	Thale cress	plastid	56.76	38.18
CDX85730	Canola	plastid	55.41	35.19
CDY51107	Canola	plastid	54.05	35.09
KRH61721	Soybean	plastid	56.76	31.46
GSMUA_Achr1P09980_001	Banana	plastid	35.14	23.21

Protein Annotations

EnsemblPlants:Solyc03g117290.1.1	EnsemblPlantsGene:Solyc03g117290.1	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12	SEG:seg	UniParc:UPI00027674EC
UniProt:K4BLN1	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3:+:66472201..66472647

Molecular Weight (calculated)

16763.0 Da

IEP (calculated)

12.341

GRAVY (calculated)

-0.913

Length

148 amino acids

Sequence
(BLAST)

001: MTRSTSPTRV NLRRSVSPSP NVRFSTSAGR SISVYPHQQK QTSRPLPSHQ KKTCMCSPTT HPGSFRCSLH KNMSQNRSHS NSSYRSSYHL NMRRSAMTNS
101: LVRIGTVEGE LVKRALAALI RPSSHQLRRR DDFQPRPSRL SVMSKAEN

Best Arabidopsis Sequence Match ( AT5G11090.1 )
(BLAST)

001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN

Arabidopsis Description

At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.