CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006088.1-P	Field mustard	plastid	92.76	94.47
CDX78410	Canola	mitochondrion, plastid	92.76	92.34
CDX97080	Canola	mitochondrion, plastid	72.4	80.81
CDX69786	Canola	mitochondrion, plastid	70.14	79.9
CDX88167	Canola	plastid	59.73	71.74
CDX80497	Canola	plastid	64.71	69.42
CDX87091	Canola	plastid	60.63	68.37
CDY19808	Canola	plastid	58.37	66.84
KRH52394	Soybean	plastid	59.73	61.4
KRH15826	Soybean	plastid	52.49	59.18
CDX85730	Canola	plastid	61.99	58.8
CDY51107	Canola	plastid	60.63	58.77
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	38.91	58.11
KRH05207	Soybean	plastid	51.13	55.39
PGSC0003DMT400096763	Potato	plastid	47.06	51.74
PGSC0003DMT400073335	Potato	plastid	43.89	51.32
VIT_09s0002g08540.t01	Wine grape	plastid	45.7	50.25
Solyc06g068330.1.1	Tomato	plastid	43.44	48.73
KRH61721	Soybean	plastid	56.56	46.82
CDY68410	Canola	plastid	25.79	37.25
CDY45090	Canola	plastid	25.34	36.6
CDX70925	Canola	plastid	22.62	34.25
CDY51848	Canola	plastid	24.43	32.34
GSMUA_Achr1P09980_001	Banana	plastid	32.58	32.14
CDX92466	Canola	plastid	20.36	25.42
CDY56862	Canola	plastid	20.81	24.34

Protein Annotations

EnsemblPlants:CDX70380	EnsemblPlantsGene:GSBRNA2T00140174001	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12	ProteinID:CDX70380	ProteinID:CDX70380.1
SEG:seg	UniParc:UPI0004EE230E	MapMan:35.2	:	:	:

Description

BnaC03g04640D

Coordinates

chrLK031791:+:141462..142903

Molecular Weight (calculated)

24198.4 Da

IEP (calculated)

12.252

GRAVY (calculated)

-0.779

Length

221 amino acids

Sequence
(BLAST)

001: MQRKTMVTTS SRTKSNGPVL RSQSPSGRFC GAYSNPIPSS SSSAFASSTS SSFSSPSSAF FSNRHDNHHH SHHRSASPTR VNLYNKPQPI AFSLDTRSIS
101: PTTTNRSISV TKKPQPSKIS SPRRCMCSPT THPGSFRCSL HKNVANPHGQ GTASYPTNSL NMRRSAMTNS LVRIGGVEGE WVRRALTTLI RPSSHHLRRR
201: AAYQPRPSRL STMSKAATEC N

Best Arabidopsis Sequence Match ( AT5G11090.1 )
(BLAST)

001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN

Arabidopsis Description

At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.