CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006088.1-P	Field mustard	plastid	97.75	100.0
CDX70380	Canola	mitochondrion, plastid	92.34	92.76
CDX97080	Canola	mitochondrion, plastid	70.27	78.79
CDX69786	Canola	mitochondrion, plastid	68.02	77.84
CDX88167	Canola	plastid	61.26	73.91
CDX80497	Canola	plastid	65.77	70.87
CDY19808	Canola	plastid	59.91	68.91
CDX87091	Canola	plastid	58.56	66.33
KRH52394	Soybean	plastid	61.26	63.26
CDY51107	Canola	plastid	62.61	60.96
CDX85730	Canola	plastid	63.96	60.94
KRH15826	Soybean	plastid	51.8	58.67
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	38.74	58.11
KRH05207	Soybean	plastid	50.0	54.41
PGSC0003DMT400073335	Potato	plastid	44.59	52.38
VIT_09s0002g08540.t01	Wine grape	plastid	45.95	50.75
PGSC0003DMT400096763	Potato	plastid	45.05	49.75
Solyc06g068330.1.1	Tomato	plastid	44.14	49.75
KRH61721	Soybean	plastid	58.11	48.31
CDY68410	Canola	plastid	26.58	38.56
CDY45090	Canola	plastid	26.13	37.91
CDX70925	Canola	plastid	22.97	34.93
CDY51848	Canola	plastid	25.23	33.53
GSMUA_Achr1P09980_001	Banana	plastid	33.33	33.04
CDX92466	Canola	plastid	20.72	25.99
CDY56862	Canola	plastid	22.07	25.93

Protein Annotations

EnsemblPlants:CDX78410	EnsemblPlantsGene:GSBRNA2T00129792001	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12	ProteinID:CDX78410	ProteinID:CDX78410.1
SEG:seg	UniParc:UPI0004EE2897	MapMan:35.2	:	:	:

Description

BnaA03g03220D

Coordinates

chrLK031815:+:668095..669068

Molecular Weight (calculated)

24281.6 Da

IEP (calculated)

12.252

GRAVY (calculated)

-0.745

Length

222 amino acids

Sequence
(BLAST)

001: MQRKTMVTTS SRTKSNGPVL RSQSPSGRFC GAYSNPIPSS SSSSAFASST SSSFSSPSSA FFSNRHDNHH HSHHRSASPT RVNLYKQPQP IAFSLDTRSI
101: SPTTTNRSIS VAKKPQPSKI SSPRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYPTNS LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHHLRR
201: RAAYQPRPSR LSIMSKAATE CN

Best Arabidopsis Sequence Match ( AT5G11090.1 )
(BLAST)

001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN

Arabidopsis Description

At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.