Factsheet for Solyc06g068330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g082980.2.1
Solyc07g005140.2.1
Solyc08g006660.1.1
Solyc12g010330.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11090.1	Solyc08g006660.1.1	AT4G24840.1	21798944
AT5G11090.1	Solyc07g005140.2.1	AT4G31920.1	18642946
AT5G11090.1	Solyc12g010330.1.1	AT4G31920.1	18642946
AT5G11090.1	Solyc03g082980.2.1	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073335	Potato	plastid	89.85	93.65
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	56.85	75.68
Solyc06g065900.2.1	Tomato	plastid	28.93	61.29
Solyc12g009880.1.1	Tomato	plastid	46.7	56.1
VIT_09s0002g08540.t01	Wine grape	plastid	53.81	52.74
KRH15826	Soybean	plastid	51.78	52.04
Solyc07g007330.1.1	Tomato	mitochondrion	54.31	51.94
KRH52394	Soybean	plastid	55.84	51.16
Bra028552.1-P	Field mustard	mitochondrion, plastid	47.21	48.95
CDX88167	Canola	plastid	45.69	48.91
Bra036540.1-P	Field mustard	plastid	47.21	48.69
KRH05207	Soybean	plastid	49.75	48.04
CDX87091	Canola	plastid	47.72	47.96
CDY19808	Canola	plastid	46.19	47.15
Bra009829.1-P	Field mustard	plastid	48.73	46.38
CDX80497	Canola	plastid	48.22	46.12
AT5G11090.1	Thale cress	plastid	50.76	46.08
CDX69786	Canola	mitochondrion, plastid	45.18	45.88
Bra008991.1-P	Field mustard	nucleus, plastid	50.76	45.66
CDX97080	Canola	mitochondrion, plastid	45.69	45.45
Bra006088.1-P	Field mustard	plastid	49.75	45.16
AT5G25280.3	Thale cress	plastid	50.25	45.0
CDX78410	Canola	mitochondrion, plastid	49.75	44.14
CDX70380	Canola	mitochondrion, plastid	48.73	43.44
CDY51107	Canola	plastid	44.67	38.6
KRH61721	Soybean	plastid	52.28	38.58
CDX85730	Canola	plastid	45.18	38.2
GSMUA_Achr1P09980_001	Banana	plastid	30.96	27.23

Protein Annotations

EnsemblPlants:Solyc06g068330.1.1	EnsemblPlantsGene:Solyc06g068330.1	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12	SEG:seg	UniParc:UPI0002766397
UniProt:K4C808	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6:-:42330982..42331575

Molecular Weight (calculated)

22086.0 Da

IEP (calculated)

11.825

GRAVY (calculated)

-0.824

Length

197 amino acids

Sequence
(BLAST)

001: MESSSSKNKL HHNYQRSVSP SGRFCSSTIS SSTFSAQTSD WLTRSTSPTR VNLRRSVSPS PSVRFSSSNN RSISVFPRKP QQNRHPLPSS SNQKKHCTCS
101: PTTHPGSFRC SLHRKTTNRS DGQSYHSSHP LNMRRSAMTN SLVRIGAVEG ELVKRALAAL IRPSSHQLRR RCDFQPKPSR LSVMSKAEDY ICDVQLL

Best Arabidopsis Sequence Match ( AT5G25280.2 )
(BLAST)

001: MAITSSRTTR SNGSASLRSK SPSGRFCGVY SNRMPSSSPS SSGFASSTSS SFSSPSTAFF SSHNQNNHHQ HRSASPTRVN LFTSAPMTQS FRYSIDNRSI
101: SPNRSIAVSS NKPSNHHKIP DSRRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYTTNG LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHQLKR
201: RSAYEPRRSR LASMSKAEDL

Arabidopsis Description

AT5g25280/F18G18_20 [Source:UniProtKB/TrEMBL;Acc:Q93WB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.