Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19808 | Canola | plastid | 80.1 | 81.35 |
| CDX88167 | Canola | plastid | 62.24 | 66.3 |
| CDX80497 | Canola | plastid | 69.39 | 66.02 |
| AT5G25280.3 | Thale cress | plastid | 69.9 | 62.27 |
| CDX70380 | Canola | mitochondrion, plastid | 68.37 | 60.63 |
| CDX69786 | Canola | mitochondrion, plastid | 59.18 | 59.79 |
| CDX97080 | Canola | mitochondrion, plastid | 59.18 | 58.59 |
| CDX78410 | Canola | mitochondrion, plastid | 66.33 | 58.56 |
| Solyc03g117290.1.1 | Tomato | mitochondrion, plastid | 43.88 | 58.11 |
| KRH15826 | Soybean | plastid | 54.08 | 54.08 |
| KRH52394 | Soybean | plastid | 58.16 | 53.02 |
| CDX85730 | Canola | plastid | 61.73 | 51.93 |
| CDY51107 | Canola | plastid | 59.69 | 51.32 |
| KRH05207 | Soybean | plastid | 53.06 | 50.98 |
| PGSC0003DMT400073335 | Potato | plastid | 48.98 | 50.79 |
| VIT_09s0002g08540.t01 | Wine grape | plastid | 51.02 | 49.75 |
| PGSC0003DMT400096763 | Potato | plastid | 49.49 | 48.26 |
| Solyc06g068330.1.1 | Tomato | plastid | 47.96 | 47.72 |
| KRH61721 | Soybean | plastid | 54.08 | 39.7 |
| CDY68410 | Canola | plastid | 27.55 | 35.29 |
| CDY45090 | Canola | plastid | 27.04 | 34.64 |
| CDX70925 | Canola | plastid | 23.47 | 31.51 |
| GSMUA_Achr1P09980_001 | Banana | plastid | 35.2 | 30.8 |
| CDY51848 | Canola | plastid | 23.98 | 28.14 |
| CDX92466 | Canola | plastid | 20.41 | 22.6 |
| CDY56862 | Canola | plastid | 19.39 | 20.11 |
Protein Annotations
| EnsemblPlants:CDX87091 | EnsemblPlantsGene:GSBRNA2T00145990001 | PANTHER:PTHR33132 | PANTHER:PTHR33132:SF12 | ProteinID:CDX87091 | ProteinID:CDX87091.1 |
| SEG:seg | UniParc:UPI0004EC443D | MapMan:35.2 | : | : | : |
Description
BnaC09g04060D
Coordinates
chrLK031849:-:409302..410844
Molecular Weight (calculated)
21315.0 Da
IEP (calculated)
12.399
GRAVY (calculated)
-0.672
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVTSSRTRS TASALRSPSS SGFASSTFSS RSSAFFSNQH HQPHRSASPT RVNLFASSPL KQSSFRYSID NTRSISPNHR SIAVSKPSGG NKIPDSRRRC
101: MCSPTTHPGS FRCSLHKNVA NPHGQGAAAA AYPTNSLNMR RSAMTNSLVR IGGVEGEWVR RALTALIRPS SHQLKRRSAY QPRPSRLSSM SKAEDL
101: MCSPTTHPGS FRCSLHKNVA NPHGQGAAAA AYPTNSLNMR RSAMTNSLVR IGGVEGEWVR RALTALIRPS SHQLKRRSAY QPRPSRLSSM SKAEDL
001: MAITSSRTTR SNGSASLRSK SPSGRFCGVY SNRMPSSSPS SSGFASSTSS SFSSPSTAFF SSHNQNNHHQ HRSASPTRVN LFTSAPMTQS FRYSIDNRSI
101: SPNRSIAVSS NKPSNHHKIP DSRRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYTTNG LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHQLKR
201: RSAYEPRRSR LASMSKAEDL
101: SPNRSIAVSS NKPSNHHKIP DSRRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYTTNG LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHQLKR
201: RSAYEPRRSR LASMSKAEDL
Arabidopsis Description
AT5g25280/F18G18_20 [Source:UniProtKB/TrEMBL;Acc:Q93WB2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.