CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68803
CDX70811
CDX72337
CDX79176
CDX91876
CDX92658
CDX96185
CDY03412
CDY07174
CDY11039
CDY13465
CDY27030
CDY34317
CDY48504
CDY49453
CDY49965
CDY51233
CDY56908
CDY67475

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11090.1	CDX79176	AT4G01090.1	21798944
AT5G11090.1	CDX91876	AT4G01090.1	21798944
AT5G11090.1	CDY07174	AT4G01090.1	21798944
AT5G11090.1	CDY48504	AT4G01090.1	21798944
AT5G11090.1	CDY67475	AT4G01090.1	21798944
AT5G11090.1	CDX70811	AT4G24840.1	21798944
AT5G11090.1	CDX92658	AT4G24840.1	21798944
AT5G11090.1	CDY03412	AT4G24840.1	21798944
AT5G11090.1	CDY11039	AT4G24840.1	21798944
AT5G11090.1	CDY34317	AT4G24840.1	21798944
AT5G11090.1	CDY51233	AT4G24840.1	21798944
AT5G11090.1	CDX68803	AT4G31920.1	18642946
AT5G11090.1	CDX72337	AT4G31920.1	18642946
AT5G11090.1	CDY13465	AT4G31920.1	18642946
AT5G11090.1	CDY49965	AT4G31920.1	18642946
AT5G11090.1	CDX96185	AT5G53060.1	21798944
AT5G11090.1	CDY27030	AT5G53060.1	21798944
AT5G11090.1	CDY49453	AT5G53060.1	21798944
AT5G11090.1	CDY56908	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028552.1-P	Field mustard	mitochondrion, plastid	77.19	92.63
CDX85730	Canola	plastid	86.4	84.55
AT5G11090.1	Thale cress	plastid	62.72	65.9
CDX78410	Canola	mitochondrion, plastid	60.96	62.61
CDX80497	Canola	plastid	55.7	61.65
CDX97080	Canola	mitochondrion, plastid	53.51	61.62
CDX69786	Canola	mitochondrion, plastid	52.19	61.34
CDX88167	Canola	plastid	49.12	60.87
CDX70380	Canola	mitochondrion, plastid	58.77	60.63
CDY19808	Canola	plastid	50.88	60.1
CDX87091	Canola	plastid	51.32	59.69
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	35.09	54.05
KRH52394	Soybean	plastid	48.25	51.16
KRH15826	Soybean	plastid	43.86	51.02
PGSC0003DMT400073335	Potato	plastid	39.47	47.62
KRH05207	Soybean	plastid	41.23	46.08
VIT_09s0002g08540.t01	Wine grape	plastid	40.35	45.77
Solyc06g068330.1.1	Tomato	plastid	38.6	44.67
PGSC0003DMT400096763	Potato	plastid	38.16	43.28
KRH61721	Soybean	plastid	45.61	38.95
CDY68410	Canola	plastid	25.0	37.25
CDY45090	Canola	plastid	24.56	36.6
CDX70925	Canola	plastid	21.93	34.25
CDY51848	Canola	plastid	24.12	32.93
GSMUA_Achr1P09980_001	Banana	plastid	28.51	29.02
CDX92466	Canola	plastid	19.74	25.42
CDY56862	Canola	plastid	20.61	24.87

Protein Annotations

EnsemblPlants:CDY51107	EnsemblPlantsGene:GSBRNA2T00098279001	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12	ProteinID:CDY51107	ProteinID:CDY51107.1
SEG:seg	UniParc:UPI0004EDDC6E	UniProt:A0A078IME8	MapMan:35.2	:	:

Description

BnaCnng20100DBnaCnng20100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IME8]

Coordinates

chrLK032967:+:47593..48885

Molecular Weight (calculated)

24800.3 Da

IEP (calculated)

12.277

GRAVY (calculated)

-0.452

Length

228 amino acids

Sequence
(BLAST)

001: MVTTSSSNKS NTILRYSKAV PSSSSSAFAS STSSTFSSPS SSFFHHRSSS PTPQPMSQSF RYSLDTRSIS PTNHRSISVS KKPQPKVSET TTASPSRRRR
101: CMCSPTTHPG SFRCSLHKNV ANPHGQGTAS FTGNSLNMRR SAMTNSLVRI GGVEGEWVRR ALTTLIRPSS HHLRRRAAFQ PRPSRLSVMT DLVGKSWIGG
201: STFVLFVDPS SVGRSVNFPG CVCQWIGV

Best Arabidopsis Sequence Match ( AT5G11090.1 )
(BLAST)

001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN

Arabidopsis Description

At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.