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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 2
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92466 Canola plastid 79.37 84.75
CDX70925 Canola plastid 32.8 42.47
CDY45090 Canola plastid 33.86 41.83
CDY68410 Canola plastid 33.86 41.83
CDY51848 Canola plastid 32.8 37.13
AT5G20370.1 Thale cress mitochondrion 32.28 34.86
KRH03578 Soybean nucleus, plastid 16.4 30.39
PGSC0003DMT400079003 Potato plastid 14.81 28.0
KRH20233 Soybean plastid 15.34 26.85
VIT_11s0118g00580.t01 Wine grape plastid 14.29 25.96
CDX88167 Canola plastid 22.22 22.83
CDX80497 Canola plastid 24.34 22.33
Os08t0167249-00 Rice plastid 20.63 22.29
CDY19808 Canola plastid 22.75 22.28
Zm00001d024494_P001 Maize plastid 20.11 22.22
CDX69786 Canola mitochondrion, plastid 22.75 22.16
CDX78410 Canola mitochondrion, plastid 25.93 22.07
KRH37829 Soybean plastid 14.81 22.05
CDX97080 Canola mitochondrion, plastid 22.22 21.21
CDX70380 Canola mitochondrion, plastid 24.34 20.81
KXG24525 Sorghum plastid 19.58 20.79
CDY51107 Canola plastid 24.87 20.61
CDX85730 Canola plastid 24.34 19.74
CDX87091 Canola plastid 20.11 19.39
Protein Annotations
EnsemblPlants:CDY56862EnsemblPlantsGene:GSBRNA2T00020204001PANTHER:PTHR33132PANTHER:PTHR33132:SF28ProteinID:CDY56862ProteinID:CDY56862.1
SEG:segUniParc:UPI0004EF491CUniProt:A0A078J111MapMan:35.2::
Description
BnaC09g54130DBnaC09g54130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J111]
Coordinates
chrLK033525:+:48918..49487
Molecular Weight (calculated)
20850.4 Da
IEP (calculated)
12.306
GRAVY (calculated)
-0.737
Length
189 amino acids
Sequence
(BLAST)
001: MAATGRSSAS SVLRPLSPSE RFDKINLRLK RLSTATAATP KPSSAVSRKR KCRCSPTSST HTGPSRCTIH RRLEIVKLLA NLKPKRRRST SIATATSSSS
101: SGSNEKKIGT LGLKPRRRRS GGITTSDSGL NLRKTALANS LAGLGTVEAE RCRKYLKESM VKPLSLRFRC KYRPRPRPSR FYALHKNQN
Best Arabidopsis Sequence Match ( AT5G20370.1 )
(BLAST)
001: MAATGRSSRS VLRPLSSSQR LHNNHHHHHR QRSPSPCNKN LNLRLKFYSP GSIPKPSVVT VSSNHQTKRK CLCSPTTHPG SFRCSFHRRL EHEKSKTLAS
101: STVKRNNRGD NTIRVNVGLN LRKLALMNSL AKIGSVEAER FRRSLAANLA KPSSLHSHRR PEFRPRLSRF HEDQD
Arabidopsis Description
Serine-rich protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q3E9A1]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.