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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 6
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:mitochondrion
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d024494_P001 Maize plastid 62.36 64.91
Os08t0167249-00 Rice plastid 42.13 42.86
PGSC0003DMT400079003 Potato plastid 19.66 35.0
KRH03578 Soybean nucleus, plastid 17.98 31.37
CDX70925 Canola plastid 24.72 30.14
VIT_11s0118g00580.t01 Wine grape plastid 17.42 29.81
KRH20233 Soybean plastid 16.85 27.78
Bra006558.1-P Field mustard plastid 24.72 26.35
Bra020102.1-P Field mustard plastid 22.47 26.14
CDY45090 Canola plastid 22.47 26.14
CDY68410 Canola plastid 22.47 26.14
CDY51848 Canola plastid 23.6 25.15
AT5G20370.1 Thale cress mitochondrion 23.6 24.0
KRH37829 Soybean plastid 14.61 20.47
CDY56862 Canola plastid 20.79 19.58
CDX92466 Canola plastid 18.54 18.64
Bra002297.1-P Field mustard plastid 18.54 18.64
Protein Annotations
EnsemblPlants:KXG24525EnsemblPlantsGene:SORBI_3007G054600PANTHER:PTHR33132PANTHER:PTHR33132:SF30ProteinID:KXG24525ProteinID:KXG24525.1
SEG:segUniParc:UPI00081ACC3BUniProt:A0A1B6PG08MapMan:35.2::
Description
hypothetical protein
Coordinates
chr7:+:5538025..5538561
Molecular Weight (calculated)
18141.7 Da
IEP (calculated)
12.775
GRAVY (calculated)
-0.378
Length
178 amino acids
Sequence
(BLAST)
001: MARAMAPSRH PPSAMAAAAA AAVAAASPPP AAAVPQRRGA FSRSHQPHRR HHHRLVPGPP TKAKQRASCA CSPTTHPGSY RCALHRGQGQ AGGGGAAGPP
101: LPVAAAASAA PVSSRLSAPR RASMANPLVR IAAVEGSDHI RRALAALVRP PPSQTTRRRA DAFRPTPSRL SAMSSASS
Best Arabidopsis Sequence Match ( AT5G11090.1 )
(BLAST)
001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN
Arabidopsis Description
At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.