CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69786	Canola	mitochondrion, plastid	94.95	96.91
Bra008991.1-P	Field mustard	nucleus, plastid	84.34	76.26
CDX70380	Canola	mitochondrion, plastid	80.81	72.4
CDX88167	Canola	plastid	65.66	70.65
CDX78410	Canola	mitochondrion, plastid	78.79	70.27
CDX80497	Canola	plastid	66.16	63.59
CDY19808	Canola	plastid	61.62	63.21
CDX87091	Canola	plastid	58.59	59.18
KRH52394	Soybean	plastid	62.12	57.21
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	40.4	54.05
CDY51107	Canola	plastid	61.62	53.51
CDX85730	Canola	plastid	62.63	53.22
KRH15826	Soybean	plastid	50.51	51.02
PGSC0003DMT400073335	Potato	plastid	46.46	48.68
KRH05207	Soybean	plastid	50.0	48.53
PGSC0003DMT400096763	Potato	plastid	48.48	47.76
VIT_09s0002g08540.t01	Wine grape	plastid	47.47	46.77
Solyc06g068330.1.1	Tomato	plastid	45.45	45.69
KRH61721	Soybean	plastid	59.09	43.82
CDX70925	Canola	plastid	24.75	33.56
CDY68410	Canola	plastid	25.76	33.33
CDY45090	Canola	plastid	25.25	32.68
GSMUA_Achr1P09980_001	Banana	plastid	35.86	31.7
CDY51848	Canola	plastid	25.76	30.54
CDX92466	Canola	plastid	21.21	23.73
CDY56862	Canola	plastid	21.21	22.22

Protein Annotations

EnsemblPlants:CDX97080	EnsemblPlantsGene:GSBRNA2T00104059001	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12	ProteinID:CDX97080	ProteinID:CDX97080.1
SEG:seg	UniParc:UPI0004EE6432	MapMan:35.2	:	:	:

Description

BnaC09g45450D

Coordinates

chrLK031897:+:531325..532401

Molecular Weight (calculated)

21715.4 Da

IEP (calculated)

12.161

GRAVY (calculated)

-0.786

Length

198 amino acids

Sequence
(BLAST)

001: MQRKTMVTTS SRTKSNGHVL RSQSPSGRFC GDYSKSTPSS SSSSSSAFAS STSSSFSSPS SSFFSNHHRS ASPTRVNLYN PQPMMAHHHH HHKISSSPRR
101: CMCSPTTHPG SFRCSLHKNV ANPHGQGAAS SSYPTNSLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLRRRAA YQPRPSRLSI MSKATECN

Best Arabidopsis Sequence Match ( AT5G11090.1 )
(BLAST)

001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN

Arabidopsis Description

At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.