CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88167	Canola	plastid	83.98	94.02
Bra009829.1-P	Field mustard	plastid	94.17	93.72
CDY19808	Canola	plastid	68.93	73.58
AT5G25280.3	Thale cress	plastid	77.67	72.73
CDX87091	Canola	plastid	66.02	69.39
CDX69786	Canola	mitochondrion, plastid	63.59	67.53
CDX97080	Canola	mitochondrion, plastid	63.59	66.16
CDX78410	Canola	mitochondrion, plastid	70.87	65.77
CDX70380	Canola	mitochondrion, plastid	69.42	64.71
KRH52394	Soybean	plastid	60.68	58.14
CDY51107	Canola	plastid	61.65	55.7
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	39.81	55.41
CDX85730	Canola	plastid	62.62	55.36
KRH15826	Soybean	plastid	50.0	52.55
KRH05207	Soybean	plastid	50.97	51.47
PGSC0003DMT400073335	Potato	plastid	47.09	51.32
VIT_09s0002g08540.t01	Wine grape	plastid	48.54	49.75
Solyc06g068330.1.1	Tomato	plastid	46.12	48.22
PGSC0003DMT400096763	Potato	plastid	46.12	47.26
KRH61721	Soybean	plastid	57.28	44.19
CDY68410	Canola	plastid	28.64	38.56
CDY45090	Canola	plastid	28.16	37.91
CDX70925	Canola	plastid	23.79	33.56
GSMUA_Achr1P09980_001	Banana	plastid	34.95	32.14
CDY51848	Canola	plastid	25.24	31.14
CDX92466	Canola	plastid	21.84	25.42
CDY56862	Canola	plastid	22.33	24.34

Protein Annotations

EnsemblPlants:CDX80497	EnsemblPlantsGene:GSBRNA2T00133597001	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12	ProteinID:CDX80497	ProteinID:CDX80497.1
SEG:seg	UniParc:UPI0004EDE951	MapMan:35.2	:	:	:

Description

BnaC07g29470D

Coordinates

chrLK031821:+:946275..948123

Molecular Weight (calculated)

22383.1 Da

IEP (calculated)

12.133

GRAVY (calculated)

-0.658

Length

206 amino acids

Sequence
(BLAST)

001: MVFNSSKARS SGPVLRSVSP SGRFYGGVSS PSSSGFASST SSSFSSTSFF SNSRQQHHPH HRSASPTRVN LFTSTPVNQS FCYSIDNRSV SPNQSVAVSK
101: PNKIPDSRRR CMCSPTTHPG SFRCSLHKNV ANPHGQGSAA TYSTNGLNMR RSAMTNSLVR IGGVEGEWVR RALTTLIRPS SHQLKRRSAY QPRPSRLSSM
201: SKADDV

Best Arabidopsis Sequence Match ( AT5G25280.2 )
(BLAST)

001: MAITSSRTTR SNGSASLRSK SPSGRFCGVY SNRMPSSSPS SSGFASSTSS SFSSPSTAFF SSHNQNNHHQ HRSASPTRVN LFTSAPMTQS FRYSIDNRSI
101: SPNRSIAVSS NKPSNHHKIP DSRRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYTTNG LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHQLKR
201: RSAYEPRRSR LASMSKAEDL

Arabidopsis Description

AT5g25280/F18G18_20 [Source:UniProtKB/TrEMBL;Acc:Q93WB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.