Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88167 | Canola | plastid | 85.51 | 96.2 |
| CDX80497 | Canola | plastid | 93.72 | 94.17 |
| Bra036540.1-P | Field mustard | plastid | 71.01 | 76.96 |
| AT5G25280.3 | Thale cress | plastid | 78.26 | 73.64 |
| Bra028552.1-P | Field mustard | mitochondrion, plastid | 63.77 | 69.47 |
| Bra008991.1-P | Field mustard | nucleus, plastid | 71.98 | 68.04 |
| Bra006088.1-P | Field mustard | plastid | 71.01 | 67.74 |
| KRH52394 | Soybean | plastid | 61.35 | 59.07 |
| Solyc03g117290.1.1 | Tomato | mitochondrion, plastid | 39.61 | 55.41 |
| KRH15826 | Soybean | plastid | 50.24 | 53.06 |
| KRH05207 | Soybean | plastid | 51.21 | 51.96 |
| PGSC0003DMT400073335 | Potato | plastid | 46.86 | 51.32 |
| VIT_09s0002g08540.t01 | Wine grape | plastid | 48.79 | 50.25 |
| Solyc06g068330.1.1 | Tomato | plastid | 46.38 | 48.73 |
| PGSC0003DMT400096763 | Potato | plastid | 45.89 | 47.26 |
| KRH61721 | Soybean | plastid | 57.97 | 44.94 |
| Bra020102.1-P | Field mustard | plastid | 28.02 | 37.91 |
| GSMUA_Achr1P09980_001 | Banana | plastid | 35.75 | 33.04 |
| Bra006558.1-P | Field mustard | plastid | 26.57 | 32.93 |
| Bra002297.1-P | Field mustard | plastid | 21.74 | 25.42 |
Protein Annotations
Description
AT5G25280 (E=4e-073) | serine-rich protein-related
Coordinates
chrA06:+:17563049..17563672
Molecular Weight (calculated)
22524.3 Da
IEP (calculated)
12.276
GRAVY (calculated)
-0.710
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFNSSKTRS SGPVLRSVSP SGRFYGGVSS PSSSGFASST SSSFSSTSFF SNNRQQHHPP HRSASPTRVN LFTSTPLNQS FRYSIDNRSV SPNQSVAVSK
101: PSGNKIPDSR RRCMCSPTTH PGSFRCSLHK NVANPHGQGA ATYSTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHQLKRRSA YQPRPSRLSS
201: MSKADDV
101: PSGNKIPDSR RRCMCSPTTH PGSFRCSLHK NVANPHGQGA ATYSTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHQLKRRSA YQPRPSRLSS
201: MSKADDV
001: MAITSSRTTR SNGSASLRSK SPSGRFCGVY SNRMPSSSPS SSGFASSTSS SFSSPSTAFF SSHNQNNHHQ HRSASPTRVN LFTSAPMTQS FRYSIDNRSI
101: SPNRSIAVSS NKPSNHHKIP DSRRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYTTNG LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHQLKR
201: RSAYEPRRSR LASMSKAEDL
101: SPNRSIAVSS NKPSNHHKIP DSRRRCMCSP TTHPGSFRCS LHKNVANPHG QGTASYTTNG LNMRRSAMTN SLVRIGGVEG EWVRRALTTL IRPSSHQLKR
201: RSAYEPRRSR LASMSKAEDL
Arabidopsis Description
AT5g25280/F18G18_20 [Source:UniProtKB/TrEMBL;Acc:Q93WB2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.