Factsheet for Bra028552.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000943.1-P
Bra003085.1-P
Bra006453.1-P
Bra013840.1-P
Bra019205.1-P
Bra022624.1-P
Bra023972.1-P
Bra037384.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11090.1	Bra000943.1-P	AT4G01090.1	21798944
AT5G11090.1	Bra037384.1-P	AT4G01090.1	21798944
AT5G11090.1	Bra006453.1-P	AT4G24840.1	21798944
AT5G11090.1	Bra013840.1-P	AT4G24840.1	21798944
AT5G11090.1	Bra019205.1-P	AT4G24840.1	21798944
AT5G11090.1	Bra023972.1-P	AT4G31920.1	18642946
AT5G11090.1	Bra003085.1-P	AT5G53060.1	21798944
AT5G11090.1	Bra022624.1-P	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85730	Canola	plastid	96.84	78.97
CDY51107	Canola	plastid	92.63	77.19
AT5G11090.1	Thale cress	plastid	78.95	69.12
Bra008991.1-P	Field mustard	nucleus, plastid	78.42	68.04
Bra006088.1-P	Field mustard	plastid	76.32	66.82
Bra036540.1-P	Field mustard	plastid	64.21	63.87
Bra009829.1-P	Field mustard	plastid	69.47	63.77
Solyc03g117290.1.1	Tomato	mitochondrion, plastid	45.26	58.11
KRH52394	Soybean	plastid	61.05	53.95
KRH15826	Soybean	plastid	53.68	52.04
PGSC0003DMT400073335	Potato	plastid	50.53	50.79
Solyc06g068330.1.1	Tomato	plastid	48.95	47.21
KRH05207	Soybean	plastid	50.0	46.57
PGSC0003DMT400096763	Potato	plastid	48.95	46.27
VIT_09s0002g08540.t01	Wine grape	plastid	47.89	45.27
KRH61721	Soybean	plastid	56.32	40.07
Bra020102.1-P	Field mustard	plastid	30.0	37.25
Bra006558.1-P	Field mustard	plastid	30.53	34.73
GSMUA_Achr1P09980_001	Banana	plastid	35.79	30.36
Bra002297.1-P	Field mustard	plastid	23.68	25.42

Protein Annotations

EnsemblPlants:Bra028552.1	EnsemblPlants:Bra028552.1-P	EnsemblPlantsGene:Bra028552	PANTHER:PTHR33132	PANTHER:PTHR33132:SF12	SEG:seg
UniParc:UPI000254346A	UniProt:M4EID7	MapMan:35.2	:	:	:

Description

AT5G11090 (E=2e-061) | serine-rich protein-related

Coordinates

chrA02:-:1043536..1044108

Molecular Weight (calculated)

20763.5 Da

IEP (calculated)

12.199

GRAVY (calculated)

-0.677

Length

190 amino acids

Sequence
(BLAST)

001: MVTTSSSNKS NTLLRYSKAV PSSSSSAFAS STSSTFSSPS SSFFHHRSAS PTPQPMSQSF RYSLDTRSIS PTNHRSISVS KKPQPKVSET SPSRRRCMCS
101: PTTHPGSFRC SLHKNVANPH GQGTASYTGN SLNMRRSAMT NSLVRIGGVE GEWVRRALTT LIRPSSHHLK RRAAFQPRPS RLSVMSKAEC

Best Arabidopsis Sequence Match ( AT5G11090.1 )
(BLAST)

001: MVTTSSRTKS NGPVLRSQSP SGRFCGGYSR AVPSSSSSAF ASSTSSSFSS PSSAFFSNHR HHESNHSHHR SASPTRVNLY TAQPMSQSFR YSLDSRSISP
101: TNKSISVSKN QPPSHNHKIS RRCMCSPTTH PGSFRCSLHK NVANPHGQGT ASYTTNGLNM RRSAMTNSLV RIGGVEGEWV RRALTTLIRP SSHHLKRRAA
201: YQPRPSRLSI MAKADEN

Arabidopsis Description

At5g11090 [Source:UniProtKB/TrEMBL;Acc:Q9FY56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.