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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000267.1-P
Bra000276.1-P
Bra000317.1-P
Bra000872.1-P
Bra004677.1-P
Bra004709.1-P
Bra004712.1-P
Bra004879.1-P
Bra006453.1-P
Bra012987.1-P
Bra013840.1-P
Bra016854.1-P
Bra018324.1-P
Bra018539.1-P
Bra019205.1-P
Bra020657.1-P
Bra023203.1-P
Bra025158.1-P
Bra026510.1-P
Bra036122.1-P
Bra036256.1-P
Bra037430.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G24840.1 Bra023203.1-P AT1G31780.1 21798944
AT4G24840.1 Bra036122.1-P AT1G54770.1 21798944
AT4G24840.1 Bra018324.1-P AT2G30260.1 21798944
AT4G24840.1 Bra004677.1-P AT2G42260.1 21798944
AT4G24840.1 Bra000267.1-P AT2G42580.1 21798944
AT4G24840.1 Bra004709.1-P AT2G42580.1 21798944
AT4G24840.1 Bra000276.1-P AT2G42870.1 21798944
AT4G24840.1 Bra004712.1-P AT2G42870.1 21798944
AT4G24840.1 Bra016854.1-P AT2G42870.1 21798944
AT4G24840.1 Bra000317.1-P AT2G43650.1 21798944
AT4G24840.1 Bra004879.1-P AT2G44950.1 21798944
AT4G24840.1 Bra040332.1-P AT2G44950.1 21798944
AT4G24840.1 Bra025158.1-P AT3G25710.1 21798944
AT4G24840.1 Bra026510.1-P AT3G25710.1 21798944
AT4G24840.1 Bra000872.1-P AT4G02590.1 21798944
AT4G24840.1 Bra018539.1-P AT4G02590.1 21798944
AT4G24840.1 Bra036256.1-P AT4G02590.1 21798944
AT4G24840.1 Bra006453.1-P AT4G24840.1 21798944
AT4G24840.1 Bra013840.1-P AT4G24840.1 21798944
AT4G24840.1 Bra019205.1-P AT4G24840.1 21798944
AT4G24840.1 Bra020657.1-P AT5G49210.1 21798944
AT4G24840.1 Bra037430.1-P AT5G49210.1 21798944
AT4G24840.1 Bra012987.1-P AT5G61010.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51233 Canola cytosol, plastid 99.31 99.31
AT4G24840.1 Thale cress cytosol, plastid 77.21 73.94
Bra013840.1-P Field mustard mitochondrion 64.64 71.45
Bra019205.1-P Field mustard cytosol 75.83 64.44
KRH03947 Soybean cytosol 64.09 61.46
VIT_17s0000g01560.t01 Wine grape cytosol 63.26 60.99
KRH57220 Soybean cytosol 62.43 59.87
PGSC0003DMT400067640 Potato cytosol, plastid 60.77 59.3
Solyc08g006660.1.1 Tomato plastid 60.22 58.76
GSMUA_AchrUn_... Banana cytosol 54.97 53.07
OQU90613 Sorghum cytosol 53.18 51.47
Zm00001d012851_P001 Maize cytosol 52.49 51.42
Os03t0849600-01 Rice cytosol 52.9 50.8
HORVU5Hr1G121540.1 Barley cytosol 51.52 50.47
TraesCS5B01G549700.1 Wheat cytosol 52.62 49.87
TraesCS5D01G536700.1 Wheat cytosol 52.62 49.87
TraesCS4A01G335400.1 Wheat cytosol 52.49 49.54
Zm00001d034842_P001 Maize cytosol 52.35 47.67
Protein Annotations
EnsemblPlants:Bra006453.1EnsemblPlants:Bra006453.1-PEnsemblPlantsGene:Bra006453GO:GO:0005575GO:GO:0006810GO:GO:0007030
GO:GO:0008150GO:GO:0009987GO:GO:0015031GO:GO:0016020GO:GO:0016043InterPro:COG2
InterPro:COG_complex_COG2_CInterPro:COG_su2_NPANTHER:PTHR12961PFAM:PF06148PFAM:PF12022SEG:seg
UniParc:UPI000253FE61UniProt:M4CQG4MapMan:22.6.2.2:::
Description
AT4G24840 (E=2e-240) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 214 Blast hits to 204 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 56; Plants - 22; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Coordinates
chrA03:+:3559162..3562474
Molecular Weight (calculated)
81201.0 Da
IEP (calculated)
6.407
GRAVY (calculated)
-0.181
Length
724 amino acids
Sequence
(BLAST)
001: MSDPVATLPS PRSAADVFWD DSRPPLWFNP SLFLSPVFDS ESFISDLRTF VPFDTLRSEL RSHLSSLNGE LVGHINRDYA DFGNLSAKLV DIDETAVRMR
101: APPLELREEI SAFRGSVEDA HVARASGLNQ RNDTGAAREV LESSLDAFRV VSKVEKLLQE QQDGATMRES QSMLLERIAS ELNRLKFHMT HAQNLPFIEN
201: LEKRIQSASV LFDASLRNCF IDGLNNRESN VIYNCLRAYA ATDKIKNAEE VFRTTIVAPF IHKVIAYEAY DGTLGDGLEN DYRQIKLFVA RDCKMLLEIS
301: STDKSGSHVF NFLANSILKE VLSEIQKVKP GVFSPGRPTE FLKNYKASLD FLAYLEGYCP SRSAVTKFRA EAICIEFMKQ WNVRVYFSMR FQEIAGGLDS
401: ALTSASLVFL QDSDSDKRSS PTLMLRQSVA LLESLRSCWK EDVHIFSAAD KFLRLALQLL SRYCNWVSSA VNARKSNASL TPGCEWAVSA TAEDFVYVIH
501: DVNCIVSEVR GDYLGLISHY LSSCPSEVLD VVRKSMLQGV ESLENVLPLV KKTIIEVIVD KSVEELSQLK GIAATCMMSN KPLPIRHSPY VVGLLRPLKA
601: FLEGDKARHY LTHETREELL LGTLTEMTRR YYELAAGRLS DARKTETYLQ KSRQNAQKRA GAAASGVTDH NVSGTEKMCM QLFLDLQEYG RNISALGLNP
701: ADIEPYCSLW KCVAPPDRQN TISV
Best Arabidopsis Sequence Match ( AT4G24840.1 )
(BLAST)
001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.