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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 6
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:cytosol, nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000267.1-P
Bra000276.1-P
Bra000317.1-P
Bra000872.1-P
Bra004677.1-P
Bra004709.1-P
Bra004712.1-P
Bra004879.1-P
Bra006453.1-P
Bra012987.1-P
Bra013840.1-P
Bra016854.1-P
Bra018324.1-P
Bra018539.1-P
Bra019205.1-P
Bra020657.1-P
Bra023203.1-P
Bra025158.1-P
Bra026510.1-P
Bra036122.1-P
Bra036256.1-P
Bra037430.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G24840.1 Bra023203.1-P AT1G31780.1 21798944
AT4G24840.1 Bra036122.1-P AT1G54770.1 21798944
AT4G24840.1 Bra018324.1-P AT2G30260.1 21798944
AT4G24840.1 Bra004677.1-P AT2G42260.1 21798944
AT4G24840.1 Bra000267.1-P AT2G42580.1 21798944
AT4G24840.1 Bra004709.1-P AT2G42580.1 21798944
AT4G24840.1 Bra000276.1-P AT2G42870.1 21798944
AT4G24840.1 Bra004712.1-P AT2G42870.1 21798944
AT4G24840.1 Bra016854.1-P AT2G42870.1 21798944
AT4G24840.1 Bra000317.1-P AT2G43650.1 21798944
AT4G24840.1 Bra004879.1-P AT2G44950.1 21798944
AT4G24840.1 Bra040332.1-P AT2G44950.1 21798944
AT4G24840.1 Bra025158.1-P AT3G25710.1 21798944
AT4G24840.1 Bra026510.1-P AT3G25710.1 21798944
AT4G24840.1 Bra000872.1-P AT4G02590.1 21798944
AT4G24840.1 Bra018539.1-P AT4G02590.1 21798944
AT4G24840.1 Bra036256.1-P AT4G02590.1 21798944
AT4G24840.1 Bra006453.1-P AT4G24840.1 21798944
AT4G24840.1 Bra013840.1-P AT4G24840.1 21798944
AT4G24840.1 Bra019205.1-P AT4G24840.1 21798944
AT4G24840.1 Bra020657.1-P AT5G49210.1 21798944
AT4G24840.1 Bra037430.1-P AT5G49210.1 21798944
AT4G24840.1 Bra012987.1-P AT5G61010.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34317 Canola cytosol, plastid 100.0 86.41
AT4G24840.1 Thale cress cytosol, plastid 84.27 73.02
Bra019205.1-P Field mustard cytosol 89.77 69.01
Bra006453.1-P Field mustard cytosol, plastid 71.45 64.64
KRH03947 Soybean cytosol 66.56 57.75
VIT_17s0000g01560.t01 Wine grape cytosol 65.65 57.26
KRH57220 Soybean cytosol 65.04 56.42
PGSC0003DMT400067640 Potato cytosol, plastid 62.6 55.26
Solyc08g006660.1.1 Tomato plastid 62.44 55.12
Zm00001d012851_P001 Maize cytosol 57.56 51.01
GSMUA_AchrUn_... Banana cytosol 58.32 50.93
OQU90613 Sorghum cytosol 58.02 50.8
HORVU5Hr1G121540.1 Barley cytosol 56.34 49.93
Os03t0849600-01 Rice cytosol 57.1 49.6
TraesCS5D01G536700.1 Wheat cytosol 56.64 48.56
TraesCS5B01G549700.1 Wheat cytosol 56.64 48.56
TraesCS4A01G335400.1 Wheat cytosol 56.64 48.37
Zm00001d034842_P001 Maize cytosol 57.4 47.3
Protein Annotations
EnsemblPlants:Bra013840.1EnsemblPlants:Bra013840.1-PEnsemblPlantsGene:Bra013840GO:GO:0005575GO:GO:0006810GO:GO:0007030
GO:GO:0008150GO:GO:0009987GO:GO:0015031GO:GO:0016020GO:GO:0016043InterPro:COG2
InterPro:COG_complex_COG2_CInterPro:COG_su2_NPANTHER:PTHR12961PFAM:PF06148PFAM:PF12022UniParc:UPI000254665A
UniProt:M4DBI0MapMan:22.6.2.2::::
Description
AT4G24840 (E=0.0) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 214 Blast hits to 204 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 56; Plants - 22; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Coordinates
chrA01:-:8026263..8029998
Molecular Weight (calculated)
72951.2 Da
IEP (calculated)
6.700
GRAVY (calculated)
-0.164
Length
655 amino acids
Sequence
(BLAST)
001: MRAPLLGLRE KIAAFRGSVE AALFALRSGL QQRSDAASAR EVLELLLDTF HVVSKVEKLI KVLPSAPSDW QKEDGGVSLR SSVSVENSTQ QDGTTMRETQ
101: SMLLERIASE MNRLKFYMAH AQNLPFVENM EKRIQSANVL LDASLGHSFI DGLNNSDTSV LYNCLRAYAA IDNTKSAEEI FRTTIVAPFI HKIVALETSN
201: NAAGSSGDEL ENDYKQIKHF IAKDCKMLLG ISSTDKSGLH VFDFLANSIL KEVLSAIQKV KPGAFSPGRP TQFLKNYKAS LEFLAYLEGY CPSRTAVTKF
301: RTEAVYIEFM KQWNVGVYFS LRFQEIAGAL DSALTSPSLV FIQDSDLDKR SSPNLILRQS ATLLESLRSC WEEDVLVFSA ADKFLRLTLQ LLSRYCVWVS
401: SSLHTRRGNP SPSPGCDWAV SATTEDFVYV IHDVNDLVSE VCGDYLGHIS RHLSSCSTEV LDVVRTSMLQ GGDKLKEVLP LLTNTIIEII VDKSVEDLRQ
501: VRGITTTYRM TNKPPPVRHS PYVVGILRHV KAFLEGDKAT HYLTQETREE ILLGTVTDIT RRYYESADEV VSLARRTESS LQQFRRKAQK RAGAASGASD
601: DNVSETDKMC MQLFLDAQEY GRNIAALGLK PADIPVYCSL WQCVAPADRQ NTISV
Best Arabidopsis Sequence Match ( AT4G24840.1 )
(BLAST)
001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.