Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010714.1-P | |
| Bra012880.1-P | |
| Bra033597.1-P | |
| Bra036850.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G42260.1 | Bra012880.1-P | AT3G50910.1 | 21798944 |
| AT2G42260.1 | Bra036850.1-P | AT3G50910.1 | 21798944 |
| AT2G42260.1 | Bra010714.1-P | AT4G39050.1 | 21798944 |
| AT2G42260.1 | Bra033597.1-P | AT4G39050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79885 | Canola | nucleus | 98.65 | 98.65 |
| AT2G42260.1 | Thale cress | cytosol | 80.27 | 69.11 |
| Bra007362.1-P | Field mustard | cytosol | 59.64 | 53.85 |
| KRH67023 | Soybean | nucleus | 44.39 | 46.05 |
| VIT_08s0007g07790.t01 | Wine grape | nucleus | 54.71 | 45.86 |
| Solyc10g080400.1.1 | Tomato | nucleus | 44.84 | 43.29 |
| PGSC0003DMT400060963 | Potato | nucleus | 48.43 | 42.35 |
| KRG95339 | Soybean | mitochondrion, plastid | 40.36 | 40.91 |
Protein Annotations
| MapMan:13.3.4.1.5 | EnsemblPlantsGene:Bra004677 | EnsemblPlants:Bra004677.1 | EnsemblPlants:Bra004677.1-P | GO:GO:0000003 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006464 |
| GO:GO:0006950 | GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009561 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009791 |
| GO:GO:0009960 | GO:GO:0009987 | GO:GO:0010091 | GO:GO:0010224 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0030154 | GO:GO:0042023 | GO:GO:0051783 | GO:GO:1900426 | GO:GO:1904667 | UniProt:M4CKE2 |
| InterPro:POLYCHOME/GIG1 | PANTHER:PTHR35119 | PANTHER:PTHR35119:SF1 | UniParc:UPI0002547895 | SEG:seg | : |
Description
AT2G42260 (E=8e-055) UVI4, PYM | UVI4 (UV-B-INSENSITIVE 4)
Coordinates
chrA05:-:1335648..1336385
Molecular Weight (calculated)
24978.0 Da
IEP (calculated)
11.486
GRAVY (calculated)
-0.715
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEARDRRER SVDYPAAFLN RRSHGILLDE SPLRSPVQRL PSSESLVFGR GGFARGNLGI RRTGGGGGRR RGRARASASV LPSWYPRTPL RDVSSVVRAI
101: ERRRARVGDV ETPTPQQLEV VLDDSLAPVS GERNYSMVTP GPSVGFKRPW PPSTAKVHQI LLDITRQSSA EEEEEALTPQ KKLLNSIDKV EKVVMEEIQK
201: MKSTPSAKRA EREKRVRTLM SMR
101: ERRRARVGDV ETPTPQQLEV VLDDSLAPVS GERNYSMVTP GPSVGFKRPW PPSTAKVHQI LLDITRQSSA EEEEEALTPQ KKLLNSIDKV EKVVMEEIQK
201: MKSTPSAKRA EREKRVRTLM SMR
001: MPEARDRIER QVDYPAAFLN RRSHGILLDE PATQHNLFGS PVQRVPSEAT GGLGSIGQGS MTGRGGLVRG NFGIRRTGGG RRGQIQFRSP QGRENMSLGV
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR
Arabidopsis Description
PYMProtein POLYCHOME [Source:UniProtKB/Swiss-Prot;Acc:O48533]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.