Factsheet for Bra007362.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005063.1-P
Bra013534.1-P
Bra013838.1-P
Bra015512.1-P
Bra018081.1-P
Bra027173.1-P
Bra031349.1-P
Bra032414.1-P
Bra033769.1-P
Bra035062.1-P
Bra039034.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57860.1	Bra015512.1-P	AT1G06590.1	20706207
AT3G57860.1	Bra032414.1-P	AT1G06590.1	20706207
AT3G57860.1	Bra035062.1-P	AT1G78770.1	20706207
AT3G57860.1	Bra039034.1-P	AT2G20000.1	20706207
AT3G57860.1	Bra005063.1-P	AT2G39090.1	20706207
AT3G57860.1	Bra027173.1-P	AT3G16320.1	20706207
AT3G57860.1	Bra031349.1-P	AT3G22310.1	20706207
AT3G57860.1	Bra018081.1-P	AT3G48150.1	20706207
AT3G57860.1	Bra033769.1-P	AT3G48150.1	20706207
AT3G57860.1	Bra013534.1-P	AT4G21530.1	20706207
AT3G57860.1	Bra013838.1-P	AT4G24820.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06071	Canola	cytosol	91.09	90.36
AT3G57860.1	Thale cress	cytosol	67.21	68.31
Bra004677.1-P	Field mustard	nucleus	53.85	59.64
KRH67023	Soybean	nucleus	37.65	43.26
VIT_08s0007g07790.t01	Wine grape	nucleus	44.94	41.73
KRG95339	Soybean	mitochondrion, plastid	34.82	39.09
Solyc10g080400.1.1	Tomato	nucleus	35.63	38.1
PGSC0003DMT400060963	Potato	nucleus	39.27	38.04

Protein Annotations

MapMan:13.3.4.1.5	EnsemblPlantsGene:Bra007362	EnsemblPlants:Bra007362.1	EnsemblPlants:Bra007362.1-P	GO:GO:0000003	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006950	GO:GO:0007049
GO:GO:0007088	GO:GO:0007113	GO:GO:0007127	GO:GO:0007135	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009561	GO:GO:0009605	GO:GO:0009607	GO:GO:0009791	GO:GO:0009960
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0040020	GO:GO:0051783	GO:GO:1900426
GO:GO:1904667	UniProt:M4CT20	InterPro:POLYCHOME/GIG1	PANTHER:PTHR35119	PANTHER:PTHR35119:SF1	UniParc:UPI0002542D5C
SEG:seg	:	:	:	:	:

Description

AT3G57860 (E=7e-079) UVI4-LIKE | UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE)

Coordinates

chrA09:+:28816923..28818063

Molecular Weight (calculated)

27314.0 Da

IEP (calculated)

10.588

GRAVY (calculated)

-0.572

Length

247 amino acids

Sequence
(BLAST)

001: MAEARDRLEK PVDYAAIFAN RRSHGVLLDE PASGLGVLEH PVRRLPSGSR VYPQPGSLIG GNYSSWRPGH GSGQSPFRSS QGRENLPRRG RGGASGSLLP
101: SWYPRTPLRD ITHIMRAIER KRRAGMGVES ALGGETPSHQ QVRFLETPVA LAEDEHNCVM VTPAPAVGLK RSCPPSTAKV HKMLLDITKE ISEKDEEAGF
201: ITPEKKLLNS IDVVEKIVMA EIQKLKSTPL AKRQEREKRV KTLMSMR

Best Arabidopsis Sequence Match ( AT3G57860.1 )
(BLAST)

001: MPEARDRTER PVDYSTIFAN RRRHGILLDE PDSRLSLIES PVNPDIGSIG GTGGLVRGNF TTWRPGNGRG GHTPFRLPQG RENMPIVTAR RGRGGGLLPS
101: WYPRTPLRDI THIVRAIERR RGAGTGGDDG RVIEIPTHRQ VGVLESPVPL SGEHKCSMVT PGPSVGFKRS CPPSTAKVQK MLLDITKEIA EEEAGFITPE
201: KKLLNSIDKV EKIVMAEIQK LKSTPQAKRE EREKRVRTLM TMR

Arabidopsis Description

GIG1Protein GIGAS CELL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.