Factsheet for Bra031349.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10634	Canola	mitochondrion	99.17	99.17
CDY37408	Canola	mitochondrion	97.67	97.84
CDY37406	Canola	mitochondrion	79.73	94.12
AT3G22310.1	Thale cress	mitochondrion	84.05	82.95
Bra023836.1-P	Field mustard	mitochondrion	80.9	78.93
Zm00001d008884_P001	Maize	cytosol	21.1	73.84
Zm00001d030797_P001	Maize	mitochondrion	23.09	66.83
Zm00001d048578_P001	Maize	cytosol	23.59	60.68
KRH73571	Soybean	nucleus	57.97	58.66
KRH45952	Soybean	mitochondrion	58.64	58.35
PGSC0003DMT400074131	Potato	plastid	48.17	58.23
Os07t0143700-01	Rice	plastid	31.56	57.75
KRG99044	Soybean	mitochondrion	59.3	55.52
EER97966	Sorghum	mitochondrion	55.15	55.15
VIT_12s0142g00670.t01	Wine grape	plastid	60.47	54.65
HORVU2Hr1G060640.15	Barley	cytosol	47.84	53.93
GSMUA_Achr7P00980_001	Banana	mitochondrion	46.01	53.47
Zm00001d018787_P001	Maize	mitochondrion	53.99	53.37
Solyc07g044760.2.1	Tomato	plastid	55.65	53.17
Zm00001d031050_P002	Maize	mitochondrion	52.82	52.05
EES17375	Sorghum	mitochondrion	53.32	51.94
Os12t0611200-01	Rice	nucleus	53.82	51.59
TraesCS5B01G052100.1	Wheat	mitochondrion	51.16	51.59
Zm00001d041480_P001	Maize	mitochondrion	51.16	51.42
TraesCS5D01G057800.1	Wheat	mitochondrion	51.33	51.41
TraesCS2A01G253700.1	Wheat	mitochondrion	52.82	51.37
TraesCS2B01G273300.1	Wheat	plastid	52.33	50.89
TraesCS2D01G254200.1	Wheat	mitochondrion	52.33	50.89
TraesCS5A01G047300.2	Wheat	mitochondrion	51.99	50.81
HORVU5Hr1G011460.3	Barley	mitochondrion	52.16	50.24
Solyc12g006320.1.1	Tomato	plastid	53.65	50.23
GSMUA_Achr2P13080_001	Banana	plastid	56.31	45.94
Bra020533.1-P	Field mustard	plastid	44.02	35.86
Bra009900.1-P	Field mustard	plastid	44.19	35.56
Bra036582.1-P	Field mustard	plastid	43.69	35.4
GSMUA_Achr2P13070_001	Banana	cytosol	57.97	29.53
Bra035903.1-P	Field mustard	nucleus	29.24	27.8
Bra029275.1-P	Field mustard	nucleus	29.9	27.31
Bra033519.1-P	Field mustard	cytosol	19.1	21.66

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra031349	EnsemblPlants:Bra031349.1	EnsemblPlants:Bra031349.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009414	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0019034	GO:GO:0039694	GO:GO:0043234	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4ERC5	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00025475FD
SEG:seg	:	:	:	:	:

Description

AT3G22310 (E=1e-217) PMH1, ATRH9 | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent helicase/ DNA binding / RNA binding

Coordinates

chrA05:-:15835078..15837410

Molecular Weight (calculated)

63649.2 Da

IEP (calculated)

9.433

GRAVY (calculated)

-0.346

Length

602 amino acids

Sequence
(BLAST)

001: MISTVLRRSV LGASRRTQTL SASLTSLNAA LFHHLAPSSS AAATVSDLKS GVALPQTPNP YGVKAIDFHF QSGPSEFRAS MAYHAGFAAQ DYAPSYDGGD
101: SEESVGSSSN GGDGLAISEL GISPEIVKAL SGRGIDKLFP IQKAVLEPAM QGRDMIGRAR TGTGKTLAFG IPVIDKIIKF NAKHGRGKNP LCLVLAPTRE
201: LARQVEKEFR ESAPSLDTIC LYGGTPIGQQ MRELNYGVDV AVGTPGRIID LMKRGALNLS EVQFIVLDEA DQMLQVGFAE DVEVILQKLP EKRQSMMFSA
301: TMPSWIRSLT KKYLNNPLTI DLVGDSDQKL ADGITMYSIS ADSYGKASII GPLVEAHGKG GKCIVFTQTK RDADRLSYGL AKTFKCEALH GDISQSQRER
401: TLAGFRDGNF NILVATDVAA RGLDVPNVDL VIHYELPNNT ETFVHRTGRT GRAGKKGNAI LIHGPEQSRA VKMIEREVGS KFTELPSIPV ERGSGSMFEG
501: IGGRSGGSYG GGMRDRSSSY GGRSGGYGGG GGSGRYGGDR SEGSGNRYSG GSDRSSGYGG FGSGSSNRSS GGYGGFGSDR SSQSSGRSSF GGFGLKDPNS
601: SY

Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.