CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008884_P001	Maize	cytosol	27.08	94.77
Zm00001d018787_P001	Maize	mitochondrion	91.03	89.98
Zm00001d030797_P001	Maize	mitochondrion	29.73	86.06
Zm00001d048578_P001	Maize	cytosol	31.23	80.34
Os07t0143700-01	Rice	plastid	43.02	78.72
HORVU2Hr1G060640.15	Barley	cytosol	65.95	74.34
TraesCS2A01G253700.1	Wheat	mitochondrion	75.75	73.67
TraesCS2D01G254200.1	Wheat	mitochondrion	75.42	73.34
TraesCS2B01G273300.1	Wheat	plastid	75.25	73.18
CDY46330	Canola	nucleus	30.4	62.67
KRH14557	Soybean	mitochondrion	33.22	61.92
PGSC0003DMT400074131	Potato	plastid	48.17	58.23
CDY46329	Canola	mitochondrion	52.99	58.11
CDY37406	Canola	mitochondrion	49.0	57.84
EES17375	Sorghum	mitochondrion	59.3	57.77
AT3G22310.1	Thale cress	mitochondrion	56.81	56.07
KRH73571	Soybean	nucleus	54.98	55.63
CDY37408	Canola	mitochondrion	55.32	55.41
CDY10634	Canola	mitochondrion	55.32	55.32
Bra031349.1-P	Field mustard	mitochondrion	55.15	55.15
AT3G22330.1	Thale cress	mitochondrion	56.31	55.03
VIT_12s0142g00670.t01	Wine grape	plastid	60.47	54.65
Bra023836.1-P	Field mustard	mitochondrion	55.98	54.62
KRH45952	Soybean	mitochondrion	54.49	54.21
Solyc07g044760.2.1	Tomato	plastid	55.65	53.17
KRG99044	Soybean	mitochondrion	55.81	52.26
Solyc12g006320.1.1	Tomato	plastid	53.16	49.77
KRH14556	Soybean	cytosol	22.09	46.34
KXG37219	Sorghum	plastid	45.18	35.42
EER97062	Sorghum	nucleus	29.24	24.75
EES07679	Sorghum	nucleus	18.44	21.39
OQU76875	Sorghum	cytosol	1.16	15.22

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	EntrezGene:8079918	UniProt:C5X9H0	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlants:EER97966
ProteinID:EER97966	ProteinID:EER97966.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	EnsemblPlantsGene:SORBI_3002G031700	SUPFAM:SSF52540	UniParc:UPI0001A840DF	RefSeq:XP_002461445.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:2897200..2900611

Molecular Weight (calculated)

65204.4 Da

IEP (calculated)

10.084

GRAVY (calculated)

-0.425

Length

602 amino acids

Sequence
(BLAST)

001: MISLLRRALA SSPAATCRRP LLAALLSPPS APPGPCQAPT PGSPAPPRRA LHGSPNPLGF RSTPASWTRP GPGEGVGVDT GAEEGLEIAR LWISPRIVEK
101: LAARGITKLF PIQRAVLEPA MQGKDMIGRA RTGTGKTLAF GIPIMDKILS HNEKNGNGRN PLAIVLAPTR ELARQVEKEF RESAPLDTLC VYGGVPINQQ
201: MRVLNYGVDI VVGTPGRIID LLRRGVLNLS QIQFVVLDEA DQMLAVGFDE DVEVIMEQLP QNRQSMLFSA TMPSWIRKIS NKYLNDPVII DLVGDSDQKL
301: PEGISLYSIA SDNFGKQSIL GPLIKEHANG GKCIVFTQTK RDADRLAYVM GRSYPCQALH GDISQNQRER TLSGFRDGRF NILVATDVAA RGLDIPNVDL
401: VVHYEIPNTS ELFVHRSGRT ARAGKKGSAI LIYTYEQTRA VRVIEQDIGC RFTELPKMPV SDEAADMFNV TRDTRSRSAG SRRTGGPFSR EGYGGFGDHR
501: SSSFGDFGGS SDRSGGFRDS GSRYRGGSGG LRRSSSELGR PSFSRSDRFG DFGDSDFSRR GNTDFGRSRS SDDSGSSRYG RGSSGFGTSG SGNLGGFKDS
601: KR

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.