CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46329	Canola	mitochondrion	85.62	45.54
CDY37408	Canola	mitochondrion	83.22	40.43
CDY10634	Canola	mitochondrion	82.88	40.2
CDY37406	Canola	mitochondrion	66.78	38.24
HORVU2Hr1G060640.15	Barley	cytosol	59.93	32.77
KRH73571	Soybean	nucleus	64.73	31.76
KRH45952	Soybean	mitochondrion	64.38	31.07
PGSC0003DMT400074131	Potato	plastid	52.05	30.52
EER97966	Sorghum	mitochondrion	62.67	30.4
Zm00001d018787_P001	Maize	mitochondrion	61.3	29.39
Solyc07g044760.2.1	Tomato	plastid	62.67	29.05
KRG99044	Soybean	mitochondrion	63.01	28.62
VIT_12s0142g00670.t01	Wine grape	plastid	65.07	28.53
Zm00001d031050_P002	Maize	mitochondrion	59.25	28.31
Zm00001d041480_P001	Maize	mitochondrion	57.88	28.21
EES17375	Sorghum	mitochondrion	59.59	28.16
TraesCS2B01G273300.1	Wheat	plastid	59.25	27.95
TraesCS2A01G253700.1	Wheat	mitochondrion	59.25	27.95
Os12t0611200-01	Rice	nucleus	59.93	27.87
TraesCS2D01G254200.1	Wheat	mitochondrion	58.9	27.79
Solyc12g006320.1.1	Tomato	plastid	59.93	27.22
TraesCS5B01G052100.1	Wheat	mitochondrion	54.79	26.8
TraesCS5A01G047300.2	Wheat	mitochondrion	55.48	26.3
TraesCS5D01G057800.1	Wheat	mitochondrion	54.11	26.29
HORVU5Hr1G011460.3	Barley	mitochondrion	54.79	25.6
GSMUA_Achr7P00980_001	Banana	mitochondrion	44.86	25.29
GSMUA_Achr2P13080_001	Banana	plastid	60.96	24.12
CDX80564	Canola	plastid	54.11	21.7
CDY05524	Canola	plastid	54.45	21.54
CDX87045	Canola	plastid	54.79	21.45
CDY66725	Canola	plastid	54.45	21.4
CDY61108	Canola	plastid	54.11	21.07
Zm00001d008884_P001	Maize	cytosol	12.33	20.93
CDY19766	Canola	plastid	54.45	20.89
CDY28363	Canola	plastid	16.44	17.52
Zm00001d030797_P001	Maize	mitochondrion	12.33	17.31
Os07t0143700-01	Rice	plastid	18.49	16.41
Zm00001d048578_P001	Maize	cytosol	12.67	15.81
GSMUA_Achr2P13070_001	Banana	cytosol	63.7	15.74
CDY16789	Canola	nucleus	30.14	13.86
CDX87236	Canola	nucleus	30.14	13.81
CDY44172	Canola	cytosol	18.84	10.36
CDY22890	Canola	cytosol	18.49	10.17
CDY34116	Canola	cytosol	17.12	9.8
CDY44622	Canola	cytosol	18.49	6.25

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A078I626	EnsemblPlants:CDY46330	ProteinID:CDY46330	ProteinID:CDY46330.1
EnsemblPlantsGene:GSBRNA2T00083740001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EDC228	SEG:seg	:	:	:

Description

BnaC01g31640DBnaC01g31640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I626]

Coordinates

chrLK032661:+:157176..158453

Molecular Weight (calculated)

31540.3 Da

IEP (calculated)

9.887

GRAVY (calculated)

-0.368

Length

292 amino acids

Sequence
(BLAST)

001: MLQVGFAEDV EIILERLPEK RQSMMFSATI PSWIRSLTKK YLNDPLTIDL VSSLVGDSDQ KLADGITTYS IMADSYGRAS IIGPLVTEHA KGGKCIVFTQ
101: TKRDADRLSY GLARTFKCEA LHGYISQSQR ERTLAGFRDG HFNILVATDV AAHGLGVPNV DLVIHYELLN NTETFVHRTG RTRRAGKKGS AILIYSQDQS
201: RAVKIIEREV GSRFTELPSI AVERGGSMFE GIGGRSGSSF GSRSGGGPGG YGCTSGRSGN RYSSGGSDRS SQSSGRIRFG GGFGSNDGKR SY

Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.