CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009900.1-P	Field mustard	plastid	99.6	99.87
CDX80564	Canola	plastid	96.53	99.45
CDX87045	Canola	plastid	94.4	94.91
CDY66725	Canola	plastid	93.2	94.08
CDY05524	Canola	plastid	92.4	93.9
CDY19766	Canola	plastid	93.73	92.38
AT5G26742.2	Thale cress	plastid	90.67	90.91
VIT_14s0060g00060.t01	Wine grape	plastid	73.33	71.99
GSMUA_Achr2P01980_001	Banana	nucleus	66.4	71.55
KRG96641	Soybean	nucleus	71.73	69.78
Solyc08g042050.2.1	Tomato	plastid	69.2	69.57
KRG90413	Soybean	plastid	67.87	69.16
Os03t0827700-01	Rice	nucleus	66.67	69.16
KRH68372	Soybean	nucleus	70.93	69.0
KRH33703	Soybean	plastid	67.6	68.89
Zm00001d012922_P003	Maize	plastid	67.73	68.19
GSMUA_Achr11P...	Banana	plastid	70.0	67.83
Zm00001d034721_P002	Maize	plastid	67.33	66.62
KXG37219	Sorghum	plastid	67.87	66.28
TraesCS4A01G367700.1	Wheat	nucleus	67.47	66.14
TraesCS5D01G505700.2	Wheat	plastid	67.6	65.76
TraesCS5B01G504900.1	Wheat	plastid	66.27	61.82
CDY46330	Canola	nucleus	21.07	54.11
CDY37406	Canola	mitochondrion	32.67	48.04
CDY46329	Canola	mitochondrion	34.67	47.36
CDY37408	Canola	mitochondrion	35.6	44.43
CDY10634	Canola	mitochondrion	35.47	44.19
CDY28363	Canola	plastid	13.47	36.86
CDY16789	Canola	nucleus	30.4	35.91
CDX87236	Canola	nucleus	29.87	35.16
CDY44172	Canola	cytosol	18.53	26.18
CDY22890	Canola	cytosol	18.4	25.99
CDY34116	Canola	cytosol	13.33	19.61
CDY44622	Canola	cytosol	14.67	12.73

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	GO:A0A078JAT9	UniProt:A0A078JAT9
EnsemblPlants:CDY61108	ProteinID:CDY61108	ProteinID:CDY61108.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00030591001	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271
PFAM:PF08152	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
SUPFAM:SSF57756	UniParc:UPI0004EED753	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

BnaA06g39420DBnaA06g39420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAT9]

Coordinates

chrLK033957:-:7872..11554

Molecular Weight (calculated)

80870.7 Da

IEP (calculated)

8.717

GRAVY (calculated)

-0.351

Length

750 amino acids

Sequence
(BLAST)

001: MASTVGVPSL YQVPHLEFSK TTSKKRSTCL PLSLNKPFLS PFSLRRPRLI HSSSSLLIPS AVATPNSVLS EEAFKSLGLS DEFDNTDPSP SDDDGEELAI
101: SKLGLPQRLG ESLEKRGITH LFPIQRAVLV PALQGRDIIA RAKTGTGKTL AFGIPIIKRL TEQAGDYSAF RKPGRLAKFL VLAPTRELAK QVEKEIKESA
201: PYLSTVCVYG GVSYTIQQNA LTRGVDVVVG TPGRIIDLIE GRSLKLGEVE YLVLDEADQM LAVGFEEAVE SILENLPQKR QSMLFSATMP TWVKKLARKY
301: LDNPLNIDLV GDQDEKLAEG IKLYAISATS TSKRTILSDL ITVYAKGGKT IVFTQTKRDA DEVSLALSSS IASEALHGDI SQHQRERTLN GFRQGKFTVL
401: VATDVASRGL DIPNVDLVIH YELPNDPETF VHRSGRTGRA GKEGSAILMH SSSQKRTVRS LERDVGCRFE FISPPTVGDL LEASADHVVA TLNGVHPESI
501: KFFSATAQKL FEEKGTDALA AALAHLSGFS QPPSSRSLLS HEQGWVTLQL IRDPTNARGF LSARSVTGFL SDVYRPAADR VGKIFMIADD RVQGAVFDLP
601: EDIAKELLEN EVPEGNSLSL ITKLPPLQDD GPSSDNYGRF SSRDRMPRGG GGSRGSRFGG RGGSSSRGRD SWGGDDDRRG RSSGGGGSSW SRGGGGGSRG
701: SSDDWLIGGG SDRRSSSSRA PSRERSFGGA CFNCGSSGHR AADCPDKRGF

Best Arabidopsis Sequence Match ( AT3G22310.2 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGGGSYGGS GGSSSRYSGG SDRSSGFGSF GSGGSSGGFG SDRSSQSSGR SSFGGFGSND GKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.