Factsheet for TraesCS5B01G504900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G367700.1	Wheat	nucleus	92.41	97.12
TraesCS5D01G505700.2	Wheat	plastid	92.91	96.89
Os03t0827700-01	Rice	nucleus	74.88	83.26
Zm00001d012922_P003	Maize	plastid	76.37	82.42
Zm00001d034721_P002	Maize	plastid	76.62	81.27
KXG37219	Sorghum	plastid	76.87	80.47
GSMUA_Achr2P01980_001	Banana	nucleus	61.94	71.55
VIT_14s0060g00060.t01	Wine grape	plastid	64.68	68.06
CDX80564	Canola	plastid	61.19	67.58
CDY05524	Canola	plastid	61.44	66.94
Bra020533.1-P	Field mustard	plastid	61.44	66.85
CDX87045	Canola	plastid	61.94	66.76
CDY66725	Canola	plastid	61.57	66.62
Bra009900.1-P	Field mustard	plastid	61.82	66.44
CDY61108	Canola	plastid	61.82	66.27
Bra036582.1-P	Field mustard	plastid	61.19	66.22
AT5G26742.2	Thale cress	plastid	61.44	66.04
Solyc08g042050.2.1	Tomato	plastid	60.95	65.68
GSMUA_Achr11P...	Banana	plastid	63.18	65.63
CDY19766	Canola	plastid	61.57	65.05
KRH68372	Soybean	nucleus	61.57	64.2
KRG90413	Soybean	plastid	58.33	63.72
KRG96641	Soybean	nucleus	61.07	63.68
KRH33703	Soybean	plastid	57.71	63.04
TraesCS2B01G273300.1	Wheat	plastid	33.96	44.1
TraesCS5B01G052100.1	Wheat	mitochondrion	32.59	43.89
TraesCS5B01G309500.1	Wheat	nucleus	30.1	34.57
TraesCS6B01G391200.1	Wheat	nucleus	15.42	23.57

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	InterPro:GUCT
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS5B01G504900	EnsemblPlants:TraesCS5B01G504900.1	TIGR:cd00079	TIGR:cd00268	TIGR:cd12938	SEG:seg

Description

No Description!

Coordinates

chr5B:-:670828258..670835289

Molecular Weight (calculated)

86255.2 Da

IEP (calculated)

8.065

GRAVY (calculated)

-0.290

Length

804 amino acids

Sequence
(BLAST)

001: MASLLTLPSL SLSSPSGGAG LAPALRLRAA FRCWALGRRW AGAAAAIASP NSVLSEHAFK RLGLGGGSGD EDEEGYGSDQ EGAAVEGLQQ GDADELAISR
101: LGLPAQLVAT LEKRGITHLF PIQRAVLIPA LEGRDLIARA KTGTGKTLAF GIPMIKQIIE QDEGRTPGRG RIPRALVLAP TRELAKQVEK EIMESAPKLS
201: TVCVYGGVSY NTQQNALSRG VDVVVGTPGR LIDLINGGSL QLGEVRYLVL DEADQMLAVG FEEDVETILQ QLPAERQSML FSATMPSWVK KLSRRYLNNP
301: LTIDLVGDQD EKLAEGIKLF AIPLTTTSKR TILSDLITVY AKGGKTIVFT RTKRDADEVS LALTTSIASE ALHGDISQHQ RERTLNGFRQ GKFTVLVATD
401: VASRGLDIPN VDLIIHYELP NDPETFVHRS GRTGRAGKAG NAILMFTTNQ RRTVKSLERD VGCKFEFIGP PTMEEVLDSS AEHVIATLRG VHPESIQYFV
501: PAAERLSQEL GPTALASALA HLSGFSQPPS SRSLISHEQG SVTLQLTRDP AYARGFFSPR SVTGFLSDVS PSAADAVGKI FLIADERVQG AVFDLPEEIA
601: KDLLTMELPE GNTLSKVTKL PVLQDDGPAT DSYGRFSNSD RGSRNRRGSS RGGMGGGSRG RGSWDSDEGF RRGGRSSSRP DNDIWSDDDF SGGGVRRSNR
701: SSSPGGGRSS YGGRGGSSSF GDRSSSFGER SSSYGGRGGS SFGSRDRRTG LCRLFAAAVA FDLCETRRDG MKQLRRYACL VNVVQGGRFD GLWEACMAEF
801: NMVG

Best Arabidopsis Sequence Match ( AT5G26742.3 )
(BLAST)

001: MTLTATTTTL KLMMVKNSLS LNLVCLNVLK SLLRNVRAVL VPALQGRDII ARAKTGTGKT LAFGIPIIKR LTEEAGDYTA FRRSGRLPKF LVLAPTRELA
101: KQVEKEIKES APYLSTVCVY GGVSYTIQQS ALTRGVDVVV GTPGRIIDLI EGRSLKLGEV EYLVLDEADQ MLAVGFEEAV ESILENLPTK RQSMLFSATM
201: PTWVKKLARK YLDNPLNIDL VGDQDEKLAE GIKLYAIATT STSKRTILSD LITVYAKGGK TIVFTQTKRD ADEVSLALSN SIATEALHGD ISQHQRERTL
301: NAFRQGKFTV LVATDVASRG LDIPNVDLVI HYELPNDPET FVHRSGRTGR AGKEGSAILM HTSSQKRTVR SLERDVGCHF EFISPPTVGD LLESSADQVV
401: ATLNGVHPDS IKFFSATAQK LYEEKGTDAL AAALAHLSGF SQPPSSRSLL SHEKGWVTLQ LIRDPTNARG FLSARSVTGF LSDLYRTAAD EVGKIFLIAD
501: DRIQGAVFDL PEEIAKELLE KDVPEGNSLS MITKLPPLQD DGPSSDNYGR FSSRDRMPRG GGGSRGSRGG RGGSSRGRDS WGGDDDRGSR RSSGGGSSWS
601: RGGSSSRGSS DDWLIGGRSS SSSRAPSRER SFGGSCFICG KSGHRATDCP DKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.