CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80564	Canola	plastid	93.03	95.33
CDY19766	Canola	plastid	96.92	95.01
CDY05524	Canola	plastid	93.57	94.58
CDY61108	Canola	plastid	94.91	94.4
CDY66725	Canola	plastid	93.97	94.35
AT5G26742.2	Thale cress	plastid	91.15	90.91
VIT_14s0060g00060.t01	Wine grape	plastid	75.47	73.69
GSMUA_Achr2P01980_001	Banana	nucleus	67.83	72.7
KRG96641	Soybean	nucleus	73.32	70.95
Solyc08g042050.2.1	Tomato	plastid	70.24	70.24
KRG90413	Soybean	plastid	69.17	70.11
KRH68372	Soybean	nucleus	72.39	70.04
KRH33703	Soybean	plastid	69.03	69.97
Os03t0827700-01	Rice	nucleus	67.29	69.43
GSMUA_Achr11P...	Banana	plastid	71.85	69.25
Zm00001d012922_P003	Maize	plastid	68.1	68.19
Zm00001d034721_P002	Maize	plastid	68.1	67.02
KXG37219	Sorghum	plastid	68.77	66.8
TraesCS4A01G367700.1	Wheat	nucleus	68.1	66.41
TraesCS5D01G505700.2	Wheat	plastid	68.23	66.02
TraesCS5B01G504900.1	Wheat	plastid	66.76	61.94
CDY46330	Canola	nucleus	21.45	54.79
CDY37406	Canola	mitochondrion	32.71	47.84
CDY46329	Canola	mitochondrion	34.85	47.36
CDY37408	Canola	mitochondrion	35.92	44.59
CDY10634	Canola	mitochondrion	35.92	44.52
CDY28363	Canola	plastid	13.54	36.86
CDY16789	Canola	nucleus	30.83	36.22
CDX87236	Canola	nucleus	30.29	35.48
CDY44172	Canola	cytosol	18.77	26.37
CDY22890	Canola	cytosol	18.63	26.18
CDY34116	Canola	cytosol	13.4	19.61
CDY44622	Canola	cytosol	14.75	12.73

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	GO:A0A078DCY2	EnsemblPlants:CDX87045
ProteinID:CDX87045	ProteinID:CDX87045.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00145931001
InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152
PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756
UniParc:UPI0004EEA20B	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

BnaC09g03600D

Coordinates

chrLK031849:+:162109..166714

Molecular Weight (calculated)

80386.0 Da

IEP (calculated)

6.964

GRAVY (calculated)

-0.359

Length

746 amino acids

Sequence
(BLAST)

001: MASTVGVPSL YQVPHLETSK PTSMKRSTSI SLSLDNPFFS SPLSLRRTRL IHSSLLPPSA VATPNSVLSE EAFKSLGLSD EFDLEEGSSS EDDAEELAIS
101: KLGLPQRLGE SLEKRGITHL FPIQRAVLVP ALEGRDIIAR AKTGTGKTLA FGIPIIKRLT EQAGDYSERS GRLPKFLVLA PTRELAKQVE KEIKESAPYL
201: STVCVYGGVS YTIQQSALSR GVDVVVGTPG RIIDLIEGRS LKLGEIEYLV LDEADQMLAV GFEEAVESIL ENLPQKRQSM LFSATMPTWV KKLARKYLDN
301: PLNIDLVGDQ DEKLAEGIKL YAISATSTSK RTILSDLITV YAKGGKTIVF TQTKRDADEV SLALSNSIAS EALHGDISQH QRERTLNGFR QGKFTVLVAT
401: DVASRGLDIP NVDLVIHYEL PNDPETFVHR SGRTGRAGKE GSAILMHSSS QKRTVRSLER DVGCRFEFIS PPTVGDLLEA SADQVVATLN GVHPESIKFF
501: SATAQKLFEE KGTDALAAAL AHLSGFSQPP SSRSLLSHEQ GWVTLQLIRD PTNSRGFLSA RSVTGFLSDV YRPAADEVGK IFMIADERVQ GAVFDLPEDI
601: AKELLEKEVP EGNSLSMITK LPPLQDDGPS GDNYGRFSSR DRMPRGGGGS RGSRFGGRGG SSRGRDSWGG DDDRRGRSSG GGGSSWSRGG GGGSRGSSDD
701: WLIGGGSDRR SSSSRGPSRE RSFGGACFTC GSSGHRAADC PDKRGF

Best Arabidopsis Sequence Match ( AT5G26742.1 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RESFGGSCFI CGKSGHRATD CPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.