CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY10512
CDY72459

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	CDY10512	AT1G53720.1	16497658
AT5G62190.1	CDY72459	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28363	Canola	plastid	23.5	74.09
CDY34116	Canola	cytosol	43.29	73.33
CDX87236	Canola	nucleus	24.19	32.81
CDY16789	Canola	nucleus	23.84	32.44
Bra029275.1-P	Field mustard	nucleus	24.42	32.02
AT5G62190.1	Thale cress	nucleus	23.03	29.66
GSMUA_Achr7P05930_001	Banana	nucleus	19.21	27.35
VIT_16s0022g02110.t01	Wine grape	plastid	20.49	25.5
KRG91400	Soybean	nucleus	20.37	25.4
PGSC0003DMT400079640	Potato	nucleus	19.79	25.37
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	19.56	25.26
Solyc06g035450.2.1	Tomato	nucleus	11.57	24.94
Solyc03g007010.2.1	Tomato	nucleus	19.44	24.63
KRH35418	Soybean	endoplasmic reticulum	19.68	24.39
HORVU5Hr1G080170.2	Barley	nucleus	18.29	24.38
TraesCS5A01G308900.1	Wheat	nucleus	18.17	22.46
Os09t0520700-01	Rice	nucleus, plastid	18.06	22.41
Zm00001d006160_P001	Maize	nucleus	18.17	22.3
GSMUA_Achr4P19590_001	Banana	nucleus	18.52	22.22
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	17.94	22.14
TraesCS5B01G309500.1	Wheat	nucleus	17.94	22.14
EER97062	Sorghum	nucleus	18.17	22.08
Zm00001d021196_P004	Maize	nucleus	17.94	21.92
Zm00001d035226_P001	Maize	plasma membrane	8.22	20.4
CDY46330	Canola	nucleus	6.25	18.49
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	5.21	18.0
Zm00001d050438_P002	Maize	extracellular	6.6	17.7
Zm00001d046048_P001	Maize	cytosol	3.82	17.55
Zm00001d049254_P001	Maize	cytosol	3.82	17.28
Zm00001d049075_P001	Maize	extracellular, golgi	8.8	15.7
CDX80564	Canola	plastid	12.73	15.11
CDY66725	Canola	plastid	12.85	14.94
CDY46329	Canola	mitochondrion	9.49	14.94
CDY05524	Canola	plastid	12.73	14.91
Zm00001d024138_P001	Maize	plastid	4.86	14.89
CDX87045	Canola	plastid	12.73	14.75
CDY37406	Canola	mitochondrion	8.68	14.71
CDY61108	Canola	plastid	12.73	14.67
Zm00001d035797_P001	Maize	mitochondrion	9.49	14.39
CDY19766	Canola	plastid	12.5	14.19
CDY37408	Canola	mitochondrion	9.49	13.64
CDY10634	Canola	mitochondrion	9.49	13.62
CDY44172	Canola	cytosol	5.9	9.6
CDY22890	Canola	cytosol	5.79	9.42

Protein Annotations

EnsemblPlants:CDY44622	EnsemblPlantsGene:GSBRNA2T00080572001	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR12663	PANTHER:PTHR12663:SF3
ProteinID:CDY44622	ProteinID:CDY44622.1	SEG:seg	SUPFAM:SSF52540	UniParc:UPI0004EF31DA	UniProt:A0A078I3K4
MapMan:35.1	:	:	:	:	:

Description

BnaC04g06400DBnaC04g06400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3K4]

Coordinates

chrLK032597:-:24393..27464

Molecular Weight (calculated)

98636.5 Da

IEP (calculated)

10.169

GRAVY (calculated)

-0.637

Length

864 amino acids

Sequence
(BLAST)

001: MKLSVEDVKI NNSNAVLKFK ITDPLREKLQ ATTSEMILGG ADLVGRARTG QGKKLVLEIK LKRGADIVVG TPGRIKDHTE RHNIATRFLK QDKKTIDLVG
101: NDKIKASNSV RPIALPCNKQ SMSRLIPYTI SLYSSGGSKI CFTKTKDQAS QFSGLLPGAR ALHGDIQQSQ RKITLVGFRK GQTRGAGKSG VAIMLYGSRK
201: SGLSSIEKQT GKRFEHVSAP QPNDIAKAVG MEAAEKIIQV YEYGEGDKLL RNCFLRQMVK ENDGNSKTQV IGEYEIESFE KDEDLVLDQK DFETLYHHEE
301: KSTGDIIMGD IIMGQSRISE DSAEKNNEDR MKIGQSCVEY ENLESFLKLP LEDPCILAHK ENESLRIVWR TLGLKIAAIY FSSYVVNTCK VLWIVNAKVE
401: TFELGKTRVS NLRPRNHETK SNRATNLDRE RREHKTKVDE RIRSGYPVRQ GERICMSYRH TGVCVYETEG KEDFMETNLE KPEDSTKTAK KLLAESKTEK
501: AQKGSAKTTT KKRLDKSVHS DAKKRNSEGG SMDMQIAKSL SKKKNSRAMK SSTKEFEQIL KSHQKRNRTA VEEVEFNKSE HGEELVSKRA NIWWSLDKKF
601: YDGIIKSYKR LNKMHQVSYS DGDSEELNFN NLKKERWKII SDEEVSKFSR IHGKFRDVVR SVHSDDEEHG KLERKRKDTL MLMGVMLCML ERRKTRMHGL
701: TVLKLIRCIL DDLLLMILKR KKMGGQSVGN TVRSLSICFS VAMGIHADEL SKEVFAGSKW LVLRYDILNL EIIKTAIGFA KQEDLSVSLI LASFKMAPYK
801: EKEWKEWEVN NYKVKEQKLR IKMCSNLRRR MLKVSLKKAC GARYPKDIWN GKEIGYILVH ELSK

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.